Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CA11 (carbonic anhydrase 11)

Identity

Alias_namescarbonic anhydrase XI
Alias_symbol (synonym)CARP2
CARPX1
Other alias
HGNC (Hugo) CA11
LocusID (NCBI) 770
Atlas_Id 61338
Location 19q13.33  [Link to chromosome band 19q13]
Location_base_pair Starts at 48637942 and ends at 48646312 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CHRNB2 (1q21.3) / CA11 (19q13.33)RNF213 (17q25.3) / CA11 (19q13.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CA11   1370
Cards
Entrez_Gene (NCBI)CA11  770  carbonic anhydrase 11
AliasesCARPX1
GeneCards (Weizmann)CA11
Ensembl hg19 (Hinxton)ENSG00000063180 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000063180 [Gene_View]  chr19:48637942-48646312 [Contig_View]  CA11 [Vega]
ICGC DataPortalENSG00000063180
TCGA cBioPortalCA11
AceView (NCBI)CA11
Genatlas (Paris)CA11
WikiGenes770
SOURCE (Princeton)CA11
Genetics Home Reference (NIH)CA11
Genomic and cartography
GoldenPath hg38 (UCSC)CA11  -     chr19:48637942-48646312 -  19q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CA11  -     19q13.33   [Description]    (hg19-Feb_2009)
EnsemblCA11 - 19q13.33 [CytoView hg19]  CA11 - 19q13.33 [CytoView hg38]
Mapping of homologs : NCBICA11 [Mapview hg19]  CA11 [Mapview hg38]
OMIM604644   
Gene and transcription
Genbank (Entrez)AB018195 AF050106 AF067662 AI568635 AY358967
RefSeq transcript (Entrez)NM_001217
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CA11
Cluster EST : UnigeneHs.428446 [ NCBI ]
CGAP (NCI)Hs.428446
Alternative Splicing GalleryENSG00000063180
Gene ExpressionCA11 [ NCBI-GEO ]   CA11 [ EBI - ARRAY_EXPRESS ]   CA11 [ SEEK ]   CA11 [ MEM ]
Gene Expression Viewer (FireBrowse)CA11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)770
GTEX Portal (Tissue expression)CA11
Human Protein AtlasENSG00000063180-CA11 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75493   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75493  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75493
Splice isoforms : SwissVarO75493
PhosPhoSitePlusO75493
Domaine pattern : Prosite (Expaxy)ALPHA_CA_2 (PS51144)   
Domains : Interpro (EBI)Carbonic_anhydrase_a    Carbonic_anhydrase_a-class   
Domain families : Pfam (Sanger)Carb_anhydrase (PF00194)   
Domain families : Pfam (NCBI)pfam00194   
Domain families : Smart (EMBL)Carb_anhydrase (SM01057)  
Conserved Domain (NCBI)CA11
DMDM Disease mutations770
Blocks (Seattle)CA11
SuperfamilyO75493
Human Protein Atlas [tissue]ENSG00000063180-CA11 [tissue]
Peptide AtlasO75493
HPRD05225
IPIIPI00025812   
Protein Interaction databases
DIP (DOE-UCLA)O75493
IntAct (EBI)O75493
FunCoupENSG00000063180
BioGRIDCA11
STRING (EMBL)CA11
ZODIACCA11
Ontologies - Pathways
QuickGOO75493
Ontology : AmiGOcarbonate dehydratase activity  extracellular region  basolateral plasma membrane  
Ontology : EGO-EBIcarbonate dehydratase activity  extracellular region  basolateral plasma membrane  
NDEx NetworkCA11
Atlas of Cancer Signalling NetworkCA11
Wikipedia pathwaysCA11
Orthology - Evolution
OrthoDB770
GeneTree (enSembl)ENSG00000063180
Phylogenetic Trees/Animal Genes : TreeFamCA11
HOVERGENO75493
HOGENOMO75493
Homologs : HomoloGeneCA11
Homology/Alignments : Family Browser (UCSC)CA11
Gene fusions - Rearrangements
Tumor Fusion PortalCA11
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCA11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CA11
dbVarCA11
ClinVarCA11
1000_GenomesCA11 
Exome Variant ServerCA11
ExAC (Exome Aggregation Consortium)ENSG00000063180
GNOMAD BrowserENSG00000063180
Genetic variants : HAPMAP770
Genomic Variants (DGV)CA11 [DGVbeta]
DECIPHERCA11 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCA11 
Mutations
ICGC Data PortalCA11 
TCGA Data PortalCA11 
Broad Tumor PortalCA11
OASIS PortalCA11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCA11  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCA11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CA11
DgiDB (Drug Gene Interaction Database)CA11
DoCM (Curated mutations)CA11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CA11 (select a term)
intoGenCA11
Cancer3DCA11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604644   
Orphanet
DisGeNETCA11
MedgenCA11
Genetic Testing Registry CA11
NextProtO75493 [Medical]
TSGene770
GENETestsCA11
Target ValidationCA11
Huge Navigator CA11 [HugePedia]
snp3D : Map Gene to Disease770
BioCentury BCIQCA11
ClinGenCA11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD770
Chemical/Pharm GKB GenePA25986
Clinical trialCA11
Miscellaneous
canSAR (ICR)CA11 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCA11
EVEXCA11
GoPubMedCA11
iHOPCA11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:38:15 CET 2017

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