Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CA13 (carbonic anhydrase 13)

Identity

Alias_namescarbonic anhydrase XIII
Alias_symbol (synonym)CAXIII
FLJ37995
MGC59868
Other alias
HGNC (Hugo) CA13
LocusID (NCBI) 377677
Atlas_Id 61339
Location 8q21.2  [Link to chromosome band 8q21]
Location_base_pair Starts at 85245487 and ends at 85284073 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ARL15 (5q11.2) / CA13 (8q21.2)CA13 (8q21.2) / CA13 (8q21.2)CA13 (8q21.2) / RBKS (2p23.2)
RAD1 (5p13.2) / CA13 (8q21.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CA13   14914
Cards
Entrez_Gene (NCBI)CA13  377677  carbonic anhydrase 13
AliasesCAXIII
GeneCards (Weizmann)CA13
Ensembl hg19 (Hinxton)ENSG00000185015 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185015 [Gene_View]  chr8:85245487-85284073 [Contig_View]  CA13 [Vega]
ICGC DataPortalENSG00000185015
TCGA cBioPortalCA13
AceView (NCBI)CA13
Genatlas (Paris)CA13
WikiGenes377677
SOURCE (Princeton)CA13
Genetics Home Reference (NIH)CA13
Genomic and cartography
GoldenPath hg38 (UCSC)CA13  -     chr8:85245487-85284073 +  8q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CA13  -     8q21.2   [Description]    (hg19-Feb_2009)
EnsemblCA13 - 8q21.2 [CytoView hg19]  CA13 - 8q21.2 [CytoView hg38]
Mapping of homologs : NCBICA13 [Mapview hg19]  CA13 [Mapview hg38]
OMIM611436   
Gene and transcription
Genbank (Entrez)AK095314 BC052602 DB287770 HQ447655
RefSeq transcript (Entrez)NM_198584
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CA13
Cluster EST : UnigeneHs.127189 [ NCBI ]
CGAP (NCI)Hs.127189
Alternative Splicing GalleryENSG00000185015
Gene ExpressionCA13 [ NCBI-GEO ]   CA13 [ EBI - ARRAY_EXPRESS ]   CA13 [ SEEK ]   CA13 [ MEM ]
Gene Expression Viewer (FireBrowse)CA13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)377677
GTEX Portal (Tissue expression)CA13
Human Protein AtlasENSG00000185015-CA13 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N1Q1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N1Q1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N1Q1
Splice isoforms : SwissVarQ8N1Q1
Catalytic activity : Enzyme4.2.1.1 [ Enzyme-Expasy ]   4.2.1.14.2.1.1 [ IntEnz-EBI ]   4.2.1.1 [ BRENDA ]   4.2.1.1 [ KEGG ]   
PhosPhoSitePlusQ8N1Q1
Domaine pattern : Prosite (Expaxy)ALPHA_CA_1 (PS00162)    ALPHA_CA_2 (PS51144)   
Domains : Interpro (EBI)Carbonic_anhydrase_a    Carbonic_anhydrase_a-class    Carbonic_anhydrase_a-class_CS   
Domain families : Pfam (Sanger)Carb_anhydrase (PF00194)   
Domain families : Pfam (NCBI)pfam00194   
Domain families : Smart (EMBL)Carb_anhydrase (SM01057)  
Conserved Domain (NCBI)CA13
DMDM Disease mutations377677
Blocks (Seattle)CA13
PDB (SRS)3CZV    3D0N    3DA2    4HU1    4KNM    4KNN    4QIZ    4QJP    4QJX    4QSJ    5E2N   
PDB (PDBSum)3CZV    3D0N    3DA2    4HU1    4KNM    4KNN    4QIZ    4QJP    4QJX    4QSJ    5E2N   
PDB (IMB)3CZV    3D0N    3DA2    4HU1    4KNM    4KNN    4QIZ    4QJP    4QJX    4QSJ    5E2N   
PDB (RSDB)3CZV    3D0N    3DA2    4HU1    4KNM    4KNN    4QIZ    4QJP    4QJX    4QSJ    5E2N   
Structural Biology KnowledgeBase3CZV    3D0N    3DA2    4HU1    4KNM    4KNN    4QIZ    4QJP    4QJX    4QSJ    5E2N   
SCOP (Structural Classification of Proteins)3CZV    3D0N    3DA2    4HU1    4KNM    4KNN    4QIZ    4QJP    4QJX    4QSJ    5E2N   
CATH (Classification of proteins structures)3CZV    3D0N    3DA2    4HU1    4KNM    4KNN    4QIZ    4QJP    4QJX    4QSJ    5E2N   
SuperfamilyQ8N1Q1
Human Protein Atlas [tissue]ENSG00000185015-CA13 [tissue]
Peptide AtlasQ8N1Q1
HPRD12992
IPIIPI00394767   
Protein Interaction databases
DIP (DOE-UCLA)Q8N1Q1
IntAct (EBI)Q8N1Q1
FunCoupENSG00000185015
BioGRIDCA13
STRING (EMBL)CA13
ZODIACCA13
Ontologies - Pathways
QuickGOQ8N1Q1
Ontology : AmiGOcarbonate dehydratase activity  cytosol  one-carbon metabolic process  zinc ion binding  bicarbonate transport  myelin sheath  intracellular membrane-bounded organelle  
Ontology : EGO-EBIcarbonate dehydratase activity  cytosol  one-carbon metabolic process  zinc ion binding  bicarbonate transport  myelin sheath  intracellular membrane-bounded organelle  
Pathways : KEGGNitrogen metabolism   
NDEx NetworkCA13
Atlas of Cancer Signalling NetworkCA13
Wikipedia pathwaysCA13
Orthology - Evolution
OrthoDB377677
GeneTree (enSembl)ENSG00000185015
Phylogenetic Trees/Animal Genes : TreeFamCA13
HOVERGENQ8N1Q1
HOGENOMQ8N1Q1
Homologs : HomoloGeneCA13
Homology/Alignments : Family Browser (UCSC)CA13
Gene fusions - Rearrangements
Fusion: Tumor Portal CA13
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCA13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CA13
dbVarCA13
ClinVarCA13
1000_GenomesCA13 
Exome Variant ServerCA13
ExAC (Exome Aggregation Consortium)ENSG00000185015
GNOMAD BrowserENSG00000185015
Genetic variants : HAPMAP377677
Genomic Variants (DGV)CA13 [DGVbeta]
DECIPHERCA13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCA13 
Mutations
ICGC Data PortalCA13 
TCGA Data PortalCA13 
Broad Tumor PortalCA13
OASIS PortalCA13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCA13  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCA13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CA13
DgiDB (Drug Gene Interaction Database)CA13
DoCM (Curated mutations)CA13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CA13 (select a term)
intoGenCA13
Cancer3DCA13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611436   
Orphanet
MedgenCA13
Genetic Testing Registry CA13
NextProtQ8N1Q1 [Medical]
TSGene377677
GENETestsCA13
Target ValidationCA13
Huge Navigator CA13 [HugePedia]
snp3D : Map Gene to Disease377677
BioCentury BCIQCA13
ClinGenCA13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD377677
Chemical/Pharm GKB GenePA134891311
Clinical trialCA13
Miscellaneous
canSAR (ICR)CA13 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCA13
EVEXCA13
GoPubMedCA13
iHOPCA13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:41:02 CET 2017

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