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CA5BP1 (carbonic anhydrase VB pseudogene 1)

Identity

Alias_namesCA5BL
CA5BP
carbonic anhydrase VB-like
carbonic anhydrase VB pseudogene
carbonic anhydrase VB pseudogene 1
Alias_symbol (synonym)PRO2325
Other alias
HGNC (Hugo) CA5BP1
LocusID (NCBI) 340591
Atlas_Id 61344
Location Xp22.2  [Link to chromosome band Xp22]
Location_base_pair Starts at 15693039 and ends at 15721474 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
RPS6KA5 (14q32.11) / CA5BP1 (Xp22.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CA5BP1   29544
Cards
Entrez_Gene (NCBI)CA5BP1  340591  carbonic anhydrase VB pseudogene 1
AliasesCA5BL; CA5BP; PRO2325
GeneCards (Weizmann)CA5BP1
Ensembl hg19 (Hinxton)ENSG00000186312 [Gene_View]  chrX:15693039-15721474 [Contig_View]  CA5BP1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000186312 [Gene_View]  chrX:15693039-15721474 [Contig_View]  CA5BP1 [Vega]
ICGC DataPortalENSG00000186312
TCGA cBioPortalCA5BP1
AceView (NCBI)CA5BP1
Genatlas (Paris)CA5BP1
WikiGenes340591
SOURCE (Princeton)CA5BP1
Genetics Home Reference (NIH)CA5BP1
Genomic and cartography
GoldenPath hg19 (UCSC)CA5BP1  -     chrX:15693039-15721474 +  Xp22.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CA5BP1  -     Xp22.2   [Description]    (hg38-Dec_2013)
EnsemblCA5BP1 - Xp22.2 [CytoView hg19]  CA5BP1 - Xp22.2 [CytoView hg38]
Mapping of homologs : NCBICA5BP1 [Mapview hg19]  CA5BP1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC021816 BC032506 BQ228866 CD675860 DB271346
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000023 NC_018934 NT_167197 NW_004929438
Consensus coding sequences : CCDS (NCBI)CA5BP1
Cluster EST : UnigeneHs.732244 [ NCBI ]
CGAP (NCI)Hs.732244
Alternative Splicing GalleryENSG00000186312
Gene ExpressionCA5BP1 [ NCBI-GEO ]   CA5BP1 [ EBI - ARRAY_EXPRESS ]   CA5BP1 [ SEEK ]   CA5BP1 [ MEM ]
Gene Expression Viewer (FireBrowse)CA5BP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)340591
GTEX Portal (Tissue expression)CA5BP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WTZ4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WTZ4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WTZ4
Splice isoforms : SwissVarQ8WTZ4
PhosPhoSitePlusQ8WTZ4
Domains : Interpro (EBI)CA-VB_mt    Carbonic_anhydrase_a    Carbonic_anhydrase_a-class   
Domain families : Pfam (Sanger)Carb_anhydrase (PF00194)   
Domain families : Pfam (NCBI)pfam00194   
Conserved Domain (NCBI)CA5BP1
DMDM Disease mutations340591
Blocks (Seattle)CA5BP1
SuperfamilyQ8WTZ4
Human Protein AtlasENSG00000186312
Peptide AtlasQ8WTZ4
IPIIPI00235626   IPI00020594   IPI00981893   
Protein Interaction databases
DIP (DOE-UCLA)Q8WTZ4
IntAct (EBI)Q8WTZ4
FunCoupENSG00000186312
BioGRIDCA5BP1
STRING (EMBL)CA5BP1
ZODIACCA5BP1
Ontologies - Pathways
QuickGOQ8WTZ4
Ontology : AmiGOcarbonate dehydratase activity  mitochondrion  metabolic process  zinc ion binding  
Ontology : EGO-EBIcarbonate dehydratase activity  mitochondrion  metabolic process  zinc ion binding  
NDEx NetworkCA5BP1
Atlas of Cancer Signalling NetworkCA5BP1
Wikipedia pathwaysCA5BP1
Orthology - Evolution
OrthoDB340591
GeneTree (enSembl)ENSG00000186312
Phylogenetic Trees/Animal Genes : TreeFamCA5BP1
HOVERGENQ8WTZ4
HOGENOMQ8WTZ4
Homologs : HomoloGeneCA5BP1
Homology/Alignments : Family Browser (UCSC)CA5BP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCA5BP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CA5BP1
dbVarCA5BP1
ClinVarCA5BP1
1000_GenomesCA5BP1 
Exome Variant ServerCA5BP1
ExAC (Exome Aggregation Consortium)CA5BP1 (select the gene name)
Genetic variants : HAPMAP340591
Genomic Variants (DGV)CA5BP1 [DGVbeta]
DECIPHER (Syndromes)X:15693039-15721474  ENSG00000186312
CONAN: Copy Number AnalysisCA5BP1 
Mutations
ICGC Data PortalCA5BP1 
TCGA Data PortalCA5BP1 
Broad Tumor PortalCA5BP1
OASIS PortalCA5BP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCA5BP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCA5BP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CA5BP1
DgiDB (Drug Gene Interaction Database)CA5BP1
DoCM (Curated mutations)CA5BP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CA5BP1 (select a term)
intoGenCA5BP1
Cancer3DCA5BP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCA5BP1
Genetic Testing Registry CA5BP1
NextProtQ8WTZ4 [Medical]
TSGene340591
GENETestsCA5BP1
Huge Navigator CA5BP1 [HugePedia]
snp3D : Map Gene to Disease340591
BioCentury BCIQCA5BP1
ClinGenCA5BP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD340591
Chemical/Pharm GKB GenePA134953520
Clinical trialCA5BP1
Miscellaneous
canSAR (ICR)CA5BP1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCA5BP1
EVEXCA5BP1
GoPubMedCA5BP1
iHOPCA5BP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:57:52 CET 2017

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