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CA7 (carbonic anhydrase 7)

Identity

Alias_namescarbonic anhydrase VII
Other aliasCAVII
HGNC (Hugo) CA7
LocusID (NCBI) 766
Atlas_Id 54187
Location 16q22.1  [Link to chromosome band 16q22]
Location_base_pair Starts at 66844938 and ends at 66854146 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
USP22 (17p11.2) / CA7 (16q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CA7   1381
Cards
Entrez_Gene (NCBI)CA7  766  carbonic anhydrase 7
AliasesCAVII
GeneCards (Weizmann)CA7
Ensembl hg19 (Hinxton)ENSG00000168748 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168748 [Gene_View]  chr16:66844938-66854146 [Contig_View]  CA7 [Vega]
ICGC DataPortalENSG00000168748
TCGA cBioPortalCA7
AceView (NCBI)CA7
Genatlas (Paris)CA7
WikiGenes766
SOURCE (Princeton)CA7
Genetics Home Reference (NIH)CA7
Genomic and cartography
GoldenPath hg38 (UCSC)CA7  -     chr16:66844938-66854146 +  16q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CA7  -     16q22.1   [Description]    (hg19-Feb_2009)
EnsemblCA7 - 16q22.1 [CytoView hg19]  CA7 - 16q22.1 [CytoView hg38]
Mapping of homologs : NCBICA7 [Mapview hg19]  CA7 [Mapview hg38]
OMIM114770   
Gene and transcription
Genbank (Entrez)AY075019 AY075020 BC033865 BI752037 DQ895264
RefSeq transcript (Entrez)NM_001014435 NM_005182
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CA7
Cluster EST : UnigeneHs.37014 [ NCBI ]
CGAP (NCI)Hs.37014
Alternative Splicing GalleryENSG00000168748
Gene ExpressionCA7 [ NCBI-GEO ]   CA7 [ EBI - ARRAY_EXPRESS ]   CA7 [ SEEK ]   CA7 [ MEM ]
Gene Expression Viewer (FireBrowse)CA7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)766
GTEX Portal (Tissue expression)CA7
Protein : pattern, domain, 3D structure
UniProt/SwissProtP43166   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP43166  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP43166
Splice isoforms : SwissVarP43166
Catalytic activity : Enzyme4.2.1.1 [ Enzyme-Expasy ]   4.2.1.14.2.1.1 [ IntEnz-EBI ]   4.2.1.1 [ BRENDA ]   4.2.1.1 [ KEGG ]   
PhosPhoSitePlusP43166
Domaine pattern : Prosite (Expaxy)ALPHA_CA_1 (PS00162)    ALPHA_CA_2 (PS51144)   
Domains : Interpro (EBI)Carbonic_anhydrase_a    Carbonic_anhydrase_a-class    Carbonic_anhydrase_a-class_CS   
Domain families : Pfam (Sanger)Carb_anhydrase (PF00194)   
Domain families : Pfam (NCBI)pfam00194   
Domain families : Smart (EMBL)Carb_anhydrase (SM01057)  
Conserved Domain (NCBI)CA7
DMDM Disease mutations766
Blocks (Seattle)CA7
PDB (SRS)3MDZ    3ML5   
PDB (PDBSum)3MDZ    3ML5   
PDB (IMB)3MDZ    3ML5   
PDB (RSDB)3MDZ    3ML5   
Structural Biology KnowledgeBase3MDZ    3ML5   
SCOP (Structural Classification of Proteins)3MDZ    3ML5   
CATH (Classification of proteins structures)3MDZ    3ML5   
SuperfamilyP43166
Human Protein AtlasENSG00000168748
Peptide AtlasP43166
HPRD00263
IPIIPI00016493   IPI01022088   IPI00556452   
Protein Interaction databases
DIP (DOE-UCLA)P43166
IntAct (EBI)P43166
FunCoupENSG00000168748
BioGRIDCA7
STRING (EMBL)CA7
ZODIACCA7
Ontologies - Pathways
QuickGOP43166
Ontology : AmiGOcarbonate dehydratase activity  cytosol  one-carbon metabolic process  zinc ion binding  bicarbonate transport  positive regulation of synaptic transmission, GABAergic  positive regulation of cellular pH reduction  regulation of chloride transport  
Ontology : EGO-EBIcarbonate dehydratase activity  cytosol  one-carbon metabolic process  zinc ion binding  bicarbonate transport  positive regulation of synaptic transmission, GABAergic  positive regulation of cellular pH reduction  regulation of chloride transport  
Pathways : KEGGNitrogen metabolism   
NDEx NetworkCA7
Atlas of Cancer Signalling NetworkCA7
Wikipedia pathwaysCA7
Orthology - Evolution
OrthoDB766
GeneTree (enSembl)ENSG00000168748
Phylogenetic Trees/Animal Genes : TreeFamCA7
HOVERGENP43166
HOGENOMP43166
Homologs : HomoloGeneCA7
Homology/Alignments : Family Browser (UCSC)CA7
Gene fusions - Rearrangements
Fusion : MitelmanUSP22/CA7 [17p11.2/16q22.1]  [t(16;17)(q22;p11)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCA7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CA7
dbVarCA7
ClinVarCA7
1000_GenomesCA7 
Exome Variant ServerCA7
ExAC (Exome Aggregation Consortium)CA7 (select the gene name)
Genetic variants : HAPMAP766
Genomic Variants (DGV)CA7 [DGVbeta]
DECIPHERCA7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCA7 
Mutations
ICGC Data PortalCA7 
TCGA Data PortalCA7 
Broad Tumor PortalCA7
OASIS PortalCA7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCA7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCA7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CA7
DgiDB (Drug Gene Interaction Database)CA7
DoCM (Curated mutations)CA7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CA7 (select a term)
intoGenCA7
Cancer3DCA7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM114770   
Orphanet
MedgenCA7
Genetic Testing Registry CA7
NextProtP43166 [Medical]
TSGene766
GENETestsCA7
Target ValidationCA7
Huge Navigator CA7 [HugePedia]
snp3D : Map Gene to Disease766
BioCentury BCIQCA7
ClinGenCA7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD766
Chemical/Pharm GKB GenePA25996
Clinical trialCA7
Miscellaneous
canSAR (ICR)CA7 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCA7
EVEXCA7
GoPubMedCA7
iHOPCA7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:56:37 CEST 2017

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