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CAAP1 (caspase activity and apoptosis inhibitor 1)

Identity

Alias_namesC9orf82
chromosome 9 open reading frame 82
Alias_symbol (synonym)FLJ13657
CAAP
Other alias
HGNC (Hugo) CAAP1
LocusID (NCBI) 79886
Atlas_Id 61345
Location 9p21.2  [Link to chromosome band 9p21]
Location_base_pair Starts at 26840685 and ends at 26892828 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CAAP1   25834
Cards
Entrez_Gene (NCBI)CAAP1  79886  caspase activity and apoptosis inhibitor 1
AliasesC9orf82; CAAP
GeneCards (Weizmann)CAAP1
Ensembl hg19 (Hinxton)ENSG00000120159 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000120159 [Gene_View]  chr9:26840685-26892828 [Contig_View]  CAAP1 [Vega]
ICGC DataPortalENSG00000120159
TCGA cBioPortalCAAP1
AceView (NCBI)CAAP1
Genatlas (Paris)CAAP1
WikiGenes79886
SOURCE (Princeton)CAAP1
Genetics Home Reference (NIH)CAAP1
Genomic and cartography
GoldenPath hg38 (UCSC)CAAP1  -     chr9:26840685-26892828 -  9p21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CAAP1  -     9p21.2   [Description]    (hg19-Feb_2009)
EnsemblCAAP1 - 9p21.2 [CytoView hg19]  CAAP1 - 9p21.2 [CytoView hg38]
Mapping of homologs : NCBICAAP1 [Mapview hg19]  CAAP1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF131768 AK023719 AK300739 AK301673 BC014658
RefSeq transcript (Entrez)NM_001167575 NM_024828
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CAAP1
Cluster EST : UnigeneHs.178357 [ NCBI ]
CGAP (NCI)Hs.178357
Alternative Splicing GalleryENSG00000120159
Gene ExpressionCAAP1 [ NCBI-GEO ]   CAAP1 [ EBI - ARRAY_EXPRESS ]   CAAP1 [ SEEK ]   CAAP1 [ MEM ]
Gene Expression Viewer (FireBrowse)CAAP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79886
GTEX Portal (Tissue expression)CAAP1
Human Protein AtlasENSG00000120159-CAAP1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H8G2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H8G2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H8G2
Splice isoforms : SwissVarQ9H8G2
PhosPhoSitePlusQ9H8G2
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CAAP1
DMDM Disease mutations79886
Blocks (Seattle)CAAP1
SuperfamilyQ9H8G2
Human Protein Atlas [tissue]ENSG00000120159-CAAP1 [tissue]
Peptide AtlasQ9H8G2
HPRD12981
IPIIPI00303812   IPI00954120   IPI00973903   IPI00974155   
Protein Interaction databases
DIP (DOE-UCLA)Q9H8G2
IntAct (EBI)Q9H8G2
FunCoupENSG00000120159
BioGRIDCAAP1
STRING (EMBL)CAAP1
ZODIACCAAP1
Ontologies - Pathways
QuickGOQ9H8G2
Ontology : AmiGOapoptotic process  
Ontology : EGO-EBIapoptotic process  
NDEx NetworkCAAP1
Atlas of Cancer Signalling NetworkCAAP1
Wikipedia pathwaysCAAP1
Orthology - Evolution
OrthoDB79886
GeneTree (enSembl)ENSG00000120159
Phylogenetic Trees/Animal Genes : TreeFamCAAP1
HOVERGENQ9H8G2
HOGENOMQ9H8G2
Homologs : HomoloGeneCAAP1
Homology/Alignments : Family Browser (UCSC)CAAP1
Gene fusions - Rearrangements
Tumor Fusion PortalCAAP1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCAAP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CAAP1
dbVarCAAP1
ClinVarCAAP1
1000_GenomesCAAP1 
Exome Variant ServerCAAP1
ExAC (Exome Aggregation Consortium)ENSG00000120159
GNOMAD BrowserENSG00000120159
Genetic variants : HAPMAP79886
Genomic Variants (DGV)CAAP1 [DGVbeta]
DECIPHERCAAP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCAAP1 
Mutations
ICGC Data PortalCAAP1 
TCGA Data PortalCAAP1 
Broad Tumor PortalCAAP1
OASIS PortalCAAP1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCAAP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CAAP1
DgiDB (Drug Gene Interaction Database)CAAP1
DoCM (Curated mutations)CAAP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CAAP1 (select a term)
intoGenCAAP1
Cancer3DCAAP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCAAP1
MedgenCAAP1
Genetic Testing Registry CAAP1
NextProtQ9H8G2 [Medical]
TSGene79886
GENETestsCAAP1
Target ValidationCAAP1
Huge Navigator CAAP1 [HugePedia]
snp3D : Map Gene to Disease79886
BioCentury BCIQCAAP1
ClinGenCAAP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79886
Chemical/Pharm GKB GenePA134943744
Clinical trialCAAP1
Miscellaneous
canSAR (ICR)CAAP1 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCAAP1
EVEXCAAP1
GoPubMedCAAP1
iHOPCAAP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:19:29 CET 2017

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