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CAB39L (calcium binding protein 39 like)

Identity

Alias (NCBI)MO25-BETA
MO2L
bA103J18.3
HGNC (Hugo) CAB39L
HGNC Alias symbbA103J18.3
FLJ12577
MO2L
HGNC Previous namecalcium binding protein 39-like
LocusID (NCBI) 81617
Atlas_Id 50657
Location 13q14.2  [Link to chromosome band 13q14]
Location_base_pair Starts at 49308650 and ends at 49401542 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)CAB39L   20290
Cards
Entrez_Gene (NCBI)CAB39L    calcium binding protein 39 like
AliasesMO25-BETA; MO2L; bA103J18.3
GeneCards (Weizmann)CAB39L
Ensembl hg19 (Hinxton)ENSG00000102547 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000102547 [Gene_View]  ENSG00000102547 [Sequence]  chr13:49308650-49401542 [Contig_View]  CAB39L [Vega]
ICGC DataPortalENSG00000102547
TCGA cBioPortalCAB39L
AceView (NCBI)CAB39L
Genatlas (Paris)CAB39L
SOURCE (Princeton)CAB39L
Genetics Home Reference (NIH)CAB39L
Genomic and cartography
GoldenPath hg38 (UCSC)CAB39L  -     chr13:49308650-49401542 -  13q14.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CAB39L  -     13q14.2   [Description]    (hg19-Feb_2009)
GoldenPathCAB39L - 13q14.2 [CytoView hg19]  CAB39L - 13q14.2 [CytoView hg38]
ImmunoBaseENSG00000102547
genome Data Viewer NCBICAB39L [Mapview hg19]  
OMIM612175   
Gene and transcription
Genbank (Entrez)AA278473 AK022639 AK309011 AW134845 AY211923
RefSeq transcript (Entrez)NM_001079670 NM_001287337 NM_001287338 NM_001287339 NM_030925
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CAB39L
Alternative Splicing GalleryENSG00000102547
Gene ExpressionCAB39L [ NCBI-GEO ]   CAB39L [ EBI - ARRAY_EXPRESS ]   CAB39L [ SEEK ]   CAB39L [ MEM ]
Gene Expression Viewer (FireBrowse)CAB39L [ Firebrowse - Broad ]
GenevisibleExpression of CAB39L in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81617
GTEX Portal (Tissue expression)CAB39L
Human Protein AtlasENSG00000102547-CAB39L [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H9S4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H9S4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H9S4
Splice isoforms : SwissVarQ9H9S4
PhosPhoSitePlusQ9H9S4
Domains : Interpro (EBI)ARM-like    ARM-type_fold    Mo25   
Domain families : Pfam (Sanger)Mo25 (PF08569)   
Domain families : Pfam (NCBI)pfam08569   
Conserved Domain (NCBI)CAB39L
Blocks (Seattle)CAB39L
PDB (RSDB)3ZHP   
PDB Europe3ZHP   
PDB (PDBSum)3ZHP   
PDB (IMB)3ZHP   
Structural Biology KnowledgeBase3ZHP   
SCOP (Structural Classification of Proteins)3ZHP   
CATH (Classification of proteins structures)3ZHP   
SuperfamilyQ9H9S4
Human Protein Atlas [tissue]ENSG00000102547-CAB39L [tissue]
Peptide AtlasQ9H9S4
HPRD12993
IPIIPI00026359   IPI00514062   IPI00783429   IPI00844534   IPI00917474   IPI00916672   IPI00916547   
Protein Interaction databases
DIP (DOE-UCLA)Q9H9S4
IntAct (EBI)Q9H9S4
BioGRIDCAB39L
STRING (EMBL)CAB39L
ZODIACCAB39L
Ontologies - Pathways
QuickGOQ9H9S4
Ontology : AmiGOprotein binding  cytosol  cell cycle arrest  intracellular signal transduction  protein serine/threonine kinase activator activity  positive regulation of protein serine/threonine kinase activity  
Ontology : EGO-EBIprotein binding  cytosol  cell cycle arrest  intracellular signal transduction  protein serine/threonine kinase activator activity  positive regulation of protein serine/threonine kinase activity  
Pathways : KEGGmTOR signaling pathway   
NDEx NetworkCAB39L
Atlas of Cancer Signalling NetworkCAB39L
Wikipedia pathwaysCAB39L
Orthology - Evolution
OrthoDB81617
GeneTree (enSembl)ENSG00000102547
Phylogenetic Trees/Animal Genes : TreeFamCAB39L
HOGENOMQ9H9S4
Homologs : HomoloGeneCAB39L
Homology/Alignments : Family Browser (UCSC)CAB39L
Gene fusions - Rearrangements
Fusion : QuiverCAB39L
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCAB39L [hg38]
dbVarCAB39L
ClinVarCAB39L
MonarchCAB39L
1000_GenomesCAB39L 
Exome Variant ServerCAB39L
GNOMAD BrowserENSG00000102547
Varsome BrowserCAB39L
Genomic Variants (DGV)CAB39L [DGVbeta]
DECIPHERCAB39L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCAB39L 
Mutations
ICGC Data PortalCAB39L 
TCGA Data PortalCAB39L 
Broad Tumor PortalCAB39L
OASIS PortalCAB39L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCAB39L  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCAB39L
Mutations and Diseases : HGMDCAB39L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CAB39L
DgiDB (Drug Gene Interaction Database)CAB39L
DoCM (Curated mutations)CAB39L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CAB39L (select a term)
intoGenCAB39L
Cancer3DCAB39L(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612175   
Orphanet
DisGeNETCAB39L
MedgenCAB39L
Genetic Testing Registry CAB39L
NextProtQ9H9S4 [Medical]
GENETestsCAB39L
Target ValidationCAB39L
Huge Navigator CAB39L [HugePedia]
ClinGenCAB39L
Clinical trials, drugs, therapy
MyCancerGenomeCAB39L
Protein Interactions : CTD
Pharm GKB GenePA134913801
PharosQ9H9S4
Clinical trialCAB39L
Miscellaneous
canSAR (ICR)CAB39L (select the gene name)
HarmonizomeCAB39L
DataMed IndexCAB39L
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCAB39L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Jan 1 18:08:01 CET 2021

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