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CAB39L (calcium binding protein 39 like)

Identity

Alias_namescalcium binding protein 39-like
Alias_symbol (synonym)bA103J18.3
FLJ12577
MO2L
Other aliasMO25-BETA
HGNC (Hugo) CAB39L
LocusID (NCBI) 81617
Atlas_Id 50657
Location 13q14.2  [Link to chromosome band 13q14]
Location_base_pair Starts at 49308650 and ends at 49444126 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CAB39L   20290
Cards
Entrez_Gene (NCBI)CAB39L  81617  calcium binding protein 39 like
AliasesMO25-BETA; MO2L; bA103J18.3
GeneCards (Weizmann)CAB39L
Ensembl hg19 (Hinxton)ENSG00000102547 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000102547 [Gene_View]  chr13:49308650-49444126 [Contig_View]  CAB39L [Vega]
ICGC DataPortalENSG00000102547
TCGA cBioPortalCAB39L
AceView (NCBI)CAB39L
Genatlas (Paris)CAB39L
WikiGenes81617
SOURCE (Princeton)CAB39L
Genetics Home Reference (NIH)CAB39L
Genomic and cartography
GoldenPath hg38 (UCSC)CAB39L  -     chr13:49308650-49444126 -  13q14.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CAB39L  -     13q14.2   [Description]    (hg19-Feb_2009)
EnsemblCAB39L - 13q14.2 [CytoView hg19]  CAB39L - 13q14.2 [CytoView hg38]
Mapping of homologs : NCBICAB39L [Mapview hg19]  CAB39L [Mapview hg38]
OMIM612175   
Gene and transcription
Genbank (Entrez)AA278473 AK022639 AK309011 AW134845 AY211923
RefSeq transcript (Entrez)NM_001079670 NM_001287337 NM_001287338 NM_001287339 NM_030925
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CAB39L
Cluster EST : UnigeneHs.742971 [ NCBI ]
CGAP (NCI)Hs.742971
Alternative Splicing GalleryENSG00000102547
Gene ExpressionCAB39L [ NCBI-GEO ]   CAB39L [ EBI - ARRAY_EXPRESS ]   CAB39L [ SEEK ]   CAB39L [ MEM ]
Gene Expression Viewer (FireBrowse)CAB39L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81617
GTEX Portal (Tissue expression)CAB39L
Human Protein AtlasENSG00000102547-CAB39L [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H9S4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H9S4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H9S4
Splice isoforms : SwissVarQ9H9S4
PhosPhoSitePlusQ9H9S4
Domains : Interpro (EBI)ARM-like    ARM-type_fold    Mo25   
Domain families : Pfam (Sanger)Mo25 (PF08569)   
Domain families : Pfam (NCBI)pfam08569   
Conserved Domain (NCBI)CAB39L
DMDM Disease mutations81617
Blocks (Seattle)CAB39L
PDB (SRS)3ZHP   
PDB (PDBSum)3ZHP   
PDB (IMB)3ZHP   
PDB (RSDB)3ZHP   
Structural Biology KnowledgeBase3ZHP   
SCOP (Structural Classification of Proteins)3ZHP   
CATH (Classification of proteins structures)3ZHP   
SuperfamilyQ9H9S4
Human Protein Atlas [tissue]ENSG00000102547-CAB39L [tissue]
Peptide AtlasQ9H9S4
HPRD12993
IPIIPI00026359   IPI00514062   IPI00783429   IPI00844534   IPI00917474   IPI00916672   IPI00916547   
Protein Interaction databases
DIP (DOE-UCLA)Q9H9S4
IntAct (EBI)Q9H9S4
FunCoupENSG00000102547
BioGRIDCAB39L
STRING (EMBL)CAB39L
ZODIACCAB39L
Ontologies - Pathways
QuickGOQ9H9S4
Ontology : AmiGOprotein binding  cytosol  cell cycle arrest  extracellular exosome  
Ontology : EGO-EBIprotein binding  cytosol  cell cycle arrest  extracellular exosome  
Pathways : KEGGmTOR signaling pathway   
NDEx NetworkCAB39L
Atlas of Cancer Signalling NetworkCAB39L
Wikipedia pathwaysCAB39L
Orthology - Evolution
OrthoDB81617
GeneTree (enSembl)ENSG00000102547
Phylogenetic Trees/Animal Genes : TreeFamCAB39L
HOVERGENQ9H9S4
HOGENOMQ9H9S4
Homologs : HomoloGeneCAB39L
Homology/Alignments : Family Browser (UCSC)CAB39L
Gene fusions - Rearrangements
Tumor Fusion PortalCAB39L
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCAB39L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CAB39L
dbVarCAB39L
ClinVarCAB39L
1000_GenomesCAB39L 
Exome Variant ServerCAB39L
ExAC (Exome Aggregation Consortium)ENSG00000102547
GNOMAD BrowserENSG00000102547
Genetic variants : HAPMAP81617
Genomic Variants (DGV)CAB39L [DGVbeta]
DECIPHERCAB39L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCAB39L 
Mutations
ICGC Data PortalCAB39L 
TCGA Data PortalCAB39L 
Broad Tumor PortalCAB39L
OASIS PortalCAB39L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCAB39L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCAB39L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CAB39L
DgiDB (Drug Gene Interaction Database)CAB39L
DoCM (Curated mutations)CAB39L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CAB39L (select a term)
intoGenCAB39L
Cancer3DCAB39L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612175   
Orphanet
DisGeNETCAB39L
MedgenCAB39L
Genetic Testing Registry CAB39L
NextProtQ9H9S4 [Medical]
TSGene81617
GENETestsCAB39L
Target ValidationCAB39L
Huge Navigator CAB39L [HugePedia]
snp3D : Map Gene to Disease81617
BioCentury BCIQCAB39L
ClinGenCAB39L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81617
Chemical/Pharm GKB GenePA134913801
Clinical trialCAB39L
Miscellaneous
canSAR (ICR)CAB39L (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCAB39L
EVEXCAB39L
GoPubMedCAB39L
iHOPCAB39L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:05:41 CET 2017

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