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CABCOCO1 (ciliary associated calcium binding coiled-coil 1)

Identity

Alias (NCBI)C10orf107
HGNC (Hugo) CABCOCO1
HGNC Alias symbbA63A2.1
Em:AC022398.2
MGC44593
HGNC Alias namecalcium-binding coiled-coil protein-1
HGNC Previous nameC10orf107
HGNC Previous namechromosome 10 open reading frame 107
LocusID (NCBI) 219621
Atlas_Id 79101
Location 10q21.2  [Link to chromosome band 10q21]
Location_base_pair Starts at 61662961 and ends at 61766333 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

 

Nomenclature
HGNC (Hugo)CABCOCO1   28678
Cards
Entrez_Gene (NCBI)CABCOCO1    ciliary associated calcium binding coiled-coil 1
AliasesC10orf107
GeneCards (Weizmann)CABCOCO1
Ensembl hg19 (Hinxton)ENSG00000183346 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183346 [Gene_View]  ENSG00000183346 [Sequence]  chr10:61662961-61766333 [Contig_View]  CABCOCO1 [Vega]
ICGC DataPortalENSG00000183346
TCGA cBioPortalCABCOCO1
AceView (NCBI)CABCOCO1
Genatlas (Paris)CABCOCO1
SOURCE (Princeton)CABCOCO1
Genetics Home Reference (NIH)CABCOCO1
Genomic and cartography
GoldenPath hg38 (UCSC)CABCOCO1  -     chr10:61662961-61766333 +  10q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CABCOCO1  -     10q21.2   [Description]    (hg19-Feb_2009)
GoldenPathCABCOCO1 - 10q21.2 [CytoView hg19]  CABCOCO1 - 10q21.2 [CytoView hg38]
ImmunoBaseENSG00000183346
Genome Data Viewer NCBICABCOCO1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BC041932 MH359362
RefSeq transcript (Entrez)NM_001366905 NM_001366906 NM_001366907 NM_001366908 NM_001366909 NM_173554
Consensus coding sequences : CCDS (NCBI)CABCOCO1
Gene ExpressionCABCOCO1 [ NCBI-GEO ]   CABCOCO1 [ EBI - ARRAY_EXPRESS ]   CABCOCO1 [ SEEK ]   CABCOCO1 [ MEM ]
Gene Expression Viewer (FireBrowse)CABCOCO1 [ Firebrowse - Broad ]
GenevisibleExpression of CABCOCO1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)219621
GTEX Portal (Tissue expression)CABCOCO1
Human Protein AtlasENSG00000183346-CABCOCO1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IVU9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IVU9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IVU9
PhosPhoSitePlusQ8IVU9
Domains : Interpro (EBI)CLAMP   
Domain families : Pfam (Sanger)CLAMP (PF14769)   
Domain families : Pfam (NCBI)pfam14769   
Conserved Domain (NCBI)CABCOCO1
SuperfamilyQ8IVU9
AlphaFold pdb e-kbQ8IVU9   
Human Protein Atlas [tissue]ENSG00000183346-CABCOCO1 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q8IVU9
IntAct (EBI)Q8IVU9
BioGRIDCABCOCO1
STRING (EMBL)CABCOCO1
ZODIACCABCOCO1
Ontologies - Pathways
QuickGOQ8IVU9
Ontology : AmiGOcalcium ion binding  protein binding  cytoplasm  centrosome  sperm flagellum  
Ontology : EGO-EBIcalcium ion binding  protein binding  cytoplasm  centrosome  sperm flagellum  
NDEx NetworkCABCOCO1
Atlas of Cancer Signalling NetworkCABCOCO1
Wikipedia pathwaysCABCOCO1
Orthology - Evolution
OrthoDB219621
GeneTree (enSembl)ENSG00000183346
Phylogenetic Trees/Animal Genes : TreeFamCABCOCO1
Homologs : HomoloGeneCABCOCO1
Homology/Alignments : Family Browser (UCSC)CABCOCO1
Gene fusions - Rearrangements
Fusion : QuiverCABCOCO1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCABCOCO1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CABCOCO1
dbVarCABCOCO1
ClinVarCABCOCO1
MonarchCABCOCO1
1000_GenomesCABCOCO1 
Exome Variant ServerCABCOCO1
GNOMAD BrowserENSG00000183346
Varsome BrowserCABCOCO1
ACMGCABCOCO1 variants
VarityQ8IVU9
Genomic Variants (DGV)CABCOCO1 [DGVbeta]
DECIPHERCABCOCO1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCABCOCO1 
Mutations
ICGC Data PortalCABCOCO1 
TCGA Data PortalCABCOCO1 
Broad Tumor PortalCABCOCO1
OASIS PortalCABCOCO1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCABCOCO1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCABCOCO1
Mutations and Diseases : HGMDCABCOCO1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaCABCOCO1
DgiDB (Drug Gene Interaction Database)CABCOCO1
DoCM (Curated mutations)CABCOCO1
CIViC (Clinical Interpretations of Variants in Cancer)CABCOCO1
Cancer3DCABCOCO1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCABCOCO1
MedgenCABCOCO1
Genetic Testing Registry CABCOCO1
NextProtQ8IVU9 [Medical]
GENETestsCABCOCO1
Target ValidationCABCOCO1
Huge Navigator CABCOCO1 [HugePedia]
ClinGenCABCOCO1
Clinical trials, drugs, therapy
MyCancerGenomeCABCOCO1
Protein Interactions : CTDCABCOCO1
Pharm GKB GenePA134897916
PharosQ8IVU9
Clinical trialCABCOCO1
Miscellaneous
canSAR (ICR)CABCOCO1
HarmonizomeCABCOCO1
DataMed IndexCABCOCO1
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCABCOCO1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:44:36 CEST 2021

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