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CABCOCO1 (ciliary associated calcium binding coiled-coil 1)

Identity

Alias_namesC10orf107
chromosome 10 open reading frame 107
Alias_symbol (synonym)bA63A2.1
Em:AC022398.2
MGC44593
Other alias
HGNC (Hugo) CABCOCO1
LocusID (NCBI) 219621
Atlas_Id 79101
Location 10q21.2  [Link to chromosome band 10q21]
Location_base_pair Starts at 61662961 and ends at 61766333 bp from pter ( according to hg38-Dec_2013)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)CABCOCO1   28678
Cards
Entrez_Gene (NCBI)CABCOCO1  219621  ciliary associated calcium binding coiled-coil 1
AliasesC10orf107; bA63A2.1
GeneCards (Weizmann)CABCOCO1
Ensembl hg19 (Hinxton)ENSG00000183346 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183346 [Gene_View]  chr10:61662961-61766333 [Contig_View]  CABCOCO1 [Vega]
ICGC DataPortalENSG00000183346
TCGA cBioPortalCABCOCO1
AceView (NCBI)CABCOCO1
Genatlas (Paris)CABCOCO1
WikiGenes219621
SOURCE (Princeton)CABCOCO1
Genetics Home Reference (NIH)CABCOCO1
Genomic and cartography
GoldenPath hg38 (UCSC)CABCOCO1  -     chr10:61662961-61766333 +  10q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CABCOCO1  -     10q21.2   [Description]    (hg19-Feb_2009)
EnsemblCABCOCO1 - 10q21.2 [CytoView hg19]  CABCOCO1 - 10q21.2 [CytoView hg38]
Mapping of homologs : NCBICABCOCO1 [Mapview hg19]  CABCOCO1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC041932 HQ447999
RefSeq transcript (Entrez)NM_173554
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CABCOCO1
Cluster EST : UnigeneHs.673160 [ NCBI ]
CGAP (NCI)Hs.673160
Alternative Splicing GalleryENSG00000183346
Gene ExpressionCABCOCO1 [ NCBI-GEO ]   CABCOCO1 [ EBI - ARRAY_EXPRESS ]   CABCOCO1 [ SEEK ]   CABCOCO1 [ MEM ]
Gene Expression Viewer (FireBrowse)CABCOCO1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)219621
GTEX Portal (Tissue expression)CABCOCO1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IVU9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IVU9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IVU9
Splice isoforms : SwissVarQ8IVU9
PhosPhoSitePlusQ8IVU9
Domains : Interpro (EBI)CLAMP   
Domain families : Pfam (Sanger)CLAMP (PF14769)   
Domain families : Pfam (NCBI)pfam14769   
Conserved Domain (NCBI)CABCOCO1
DMDM Disease mutations219621
Blocks (Seattle)CABCOCO1
SuperfamilyQ8IVU9
Human Protein AtlasENSG00000183346
Peptide AtlasQ8IVU9
IPIIPI00176323   IPI00643264   
Protein Interaction databases
DIP (DOE-UCLA)Q8IVU9
IntAct (EBI)Q8IVU9
FunCoupENSG00000183346
BioGRIDCABCOCO1
STRING (EMBL)CABCOCO1
ZODIACCABCOCO1
Ontologies - Pathways
QuickGOQ8IVU9
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCABCOCO1
Atlas of Cancer Signalling NetworkCABCOCO1
Wikipedia pathwaysCABCOCO1
Orthology - Evolution
OrthoDB219621
GeneTree (enSembl)ENSG00000183346
Phylogenetic Trees/Animal Genes : TreeFamCABCOCO1
HOVERGENQ8IVU9
HOGENOMQ8IVU9
Homologs : HomoloGeneCABCOCO1
Homology/Alignments : Family Browser (UCSC)CABCOCO1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCABCOCO1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CABCOCO1
dbVarCABCOCO1
ClinVarCABCOCO1
1000_GenomesCABCOCO1 
Exome Variant ServerCABCOCO1
ExAC (Exome Aggregation Consortium)CABCOCO1 (select the gene name)
Genetic variants : HAPMAP219621
Genomic Variants (DGV)CABCOCO1 [DGVbeta]
DECIPHERCABCOCO1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCABCOCO1 
Mutations
ICGC Data PortalCABCOCO1 
TCGA Data PortalCABCOCO1 
Broad Tumor PortalCABCOCO1
OASIS PortalCABCOCO1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCABCOCO1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CABCOCO1
DgiDB (Drug Gene Interaction Database)CABCOCO1
DoCM (Curated mutations)CABCOCO1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CABCOCO1 (select a term)
intoGenCABCOCO1
Cancer3DCABCOCO1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCABCOCO1
Genetic Testing Registry CABCOCO1
NextProtQ8IVU9 [Medical]
TSGene219621
GENETestsCABCOCO1
Target ValidationCABCOCO1
Huge Navigator CABCOCO1 [HugePedia]
snp3D : Map Gene to Disease219621
BioCentury BCIQCABCOCO1
ClinGenCABCOCO1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD219621
Chemical/Pharm GKB GenePA134897916
Clinical trialCABCOCO1
Miscellaneous
canSAR (ICR)CABCOCO1 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCABCOCO1
EVEXCABCOCO1
GoPubMedCABCOCO1
iHOPCABCOCO1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:03:42 CEST 2017

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