Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CABP1 (calcium binding protein 1)

Identity

Other aliasCALBRAIN
HCALB_BR
HGNC (Hugo) CABP1
LocusID (NCBI) 9478
Atlas_Id 61347
Location 12q24.31  [Link to chromosome band 12q24]
Location_base_pair Starts at 120640619 and ends at 120667324 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CABP1 (12q24.31) / CABP1 (12q24.31)CAMKV (3p21.31) / CABP1 (12q24.31)CUX2 (12q24.11) / CABP1 (12q24.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CABP1   1384
Cards
Entrez_Gene (NCBI)CABP1  9478  calcium binding protein 1
AliasesCALBRAIN; HCALB_BR
GeneCards (Weizmann)CABP1
Ensembl hg19 (Hinxton)ENSG00000157782 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000157782 [Gene_View]  chr12:120640619-120667324 [Contig_View]  CABP1 [Vega]
ICGC DataPortalENSG00000157782
TCGA cBioPortalCABP1
AceView (NCBI)CABP1
Genatlas (Paris)CABP1
WikiGenes9478
SOURCE (Princeton)CABP1
Genetics Home Reference (NIH)CABP1
Genomic and cartography
GoldenPath hg38 (UCSC)CABP1  -     chr12:120640619-120667324 +  12q24.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CABP1  -     12q24.31   [Description]    (hg19-Feb_2009)
EnsemblCABP1 - 12q24.31 [CytoView hg19]  CABP1 - 12q24.31 [CytoView hg38]
Mapping of homologs : NCBICABP1 [Mapview hg19]  CABP1 [Mapview hg38]
OMIM605563   
Gene and transcription
Genbank (Entrez)AF169148 AF169149 AK127203 AL533429 BC015006
RefSeq transcript (Entrez)NM_001033677 NM_004276 NM_031205
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CABP1
Cluster EST : UnigeneHs.458482 [ NCBI ]
CGAP (NCI)Hs.458482
Alternative Splicing GalleryENSG00000157782
Gene ExpressionCABP1 [ NCBI-GEO ]   CABP1 [ EBI - ARRAY_EXPRESS ]   CABP1 [ SEEK ]   CABP1 [ MEM ]
Gene Expression Viewer (FireBrowse)CABP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9478
GTEX Portal (Tissue expression)CABP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NZU7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NZU7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NZU7
Splice isoforms : SwissVarQ9NZU7
PhosPhoSitePlusQ9NZU7
Domaine pattern : Prosite (Expaxy)EF_HAND_1 (PS00018)    EF_HAND_2 (PS50222)   
Domains : Interpro (EBI)EF-hand-dom_pair    EF_Hand_1_Ca_BS    EF_hand_dom   
Domain families : Pfam (Sanger)EF-hand_7 (PF13499)   
Domain families : Pfam (NCBI)pfam13499   
Domain families : Smart (EMBL)EFh (SM00054)  
Conserved Domain (NCBI)CABP1
DMDM Disease mutations9478
Blocks (Seattle)CABP1
PDB (SRS)2K7B    2K7C    2K7D    2LAN    2LAP    3OX5    3OX6   
PDB (PDBSum)2K7B    2K7C    2K7D    2LAN    2LAP    3OX5    3OX6   
PDB (IMB)2K7B    2K7C    2K7D    2LAN    2LAP    3OX5    3OX6   
PDB (RSDB)2K7B    2K7C    2K7D    2LAN    2LAP    3OX5    3OX6   
Structural Biology KnowledgeBase2K7B    2K7C    2K7D    2LAN    2LAP    3OX5    3OX6   
SCOP (Structural Classification of Proteins)2K7B    2K7C    2K7D    2LAN    2LAP    3OX5    3OX6   
CATH (Classification of proteins structures)2K7B    2K7C    2K7D    2LAN    2LAP    3OX5    3OX6   
SuperfamilyQ9NZU7
Human Protein AtlasENSG00000157782
Peptide AtlasQ9NZU7
IPIIPI00220810   IPI00003571   IPI00472586   IPI00297321   IPI00795753   
Protein Interaction databases
DIP (DOE-UCLA)Q9NZU7
IntAct (EBI)Q9NZU7
FunCoupENSG00000157782
BioGRIDCABP1
STRING (EMBL)CABP1
ZODIACCABP1
Ontologies - Pathways
QuickGOQ9NZU7
Ontology : AmiGOGolgi membrane  enzyme inhibitor activity  calcium ion binding  protein binding  extracellular space  cytoskeleton  plasma membrane  cell cortex  nuclear localization sequence binding  postsynaptic density  cell junction  negative regulation of protein import into nucleus  negative regulation of catalytic activity  postsynaptic membrane  calcium-dependent protein binding  perinuclear region of cytoplasm  
Ontology : EGO-EBIGolgi membrane  enzyme inhibitor activity  calcium ion binding  protein binding  extracellular space  cytoskeleton  plasma membrane  cell cortex  nuclear localization sequence binding  postsynaptic density  cell junction  negative regulation of protein import into nucleus  negative regulation of catalytic activity  postsynaptic membrane  calcium-dependent protein binding  perinuclear region of cytoplasm  
NDEx NetworkCABP1
Atlas of Cancer Signalling NetworkCABP1
Wikipedia pathwaysCABP1
Orthology - Evolution
OrthoDB9478
GeneTree (enSembl)ENSG00000157782
Phylogenetic Trees/Animal Genes : TreeFamCABP1
HOVERGENQ9NZU7
HOGENOMQ9NZU7
Homologs : HomoloGeneCABP1
Homology/Alignments : Family Browser (UCSC)CABP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCABP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CABP1
dbVarCABP1
ClinVarCABP1
1000_GenomesCABP1 
Exome Variant ServerCABP1
ExAC (Exome Aggregation Consortium)CABP1 (select the gene name)
Genetic variants : HAPMAP9478
Genomic Variants (DGV)CABP1 [DGVbeta]
DECIPHERCABP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCABP1 
Mutations
ICGC Data PortalCABP1 
TCGA Data PortalCABP1 
Broad Tumor PortalCABP1
OASIS PortalCABP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCABP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCABP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CABP1
DgiDB (Drug Gene Interaction Database)CABP1
DoCM (Curated mutations)CABP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CABP1 (select a term)
intoGenCABP1
Cancer3DCABP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605563   
Orphanet
MedgenCABP1
Genetic Testing Registry CABP1
NextProtQ9NZU7 [Medical]
TSGene9478
GENETestsCABP1
Target ValidationCABP1
Huge Navigator CABP1 [HugePedia]
snp3D : Map Gene to Disease9478
BioCentury BCIQCABP1
ClinGenCABP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9478
Chemical/Pharm GKB GenePA26000
Clinical trialCABP1
Miscellaneous
canSAR (ICR)CABP1 (select the gene name)
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCABP1
EVEXCABP1
GoPubMedCABP1
iHOPCABP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 1 16:11:22 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.