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CABP4 (calcium binding protein 4)

Identity

Alias_symbol (synonym)CSNB2B
Other aliasCRSD
HGNC (Hugo) CABP4
LocusID (NCBI) 57010
Atlas_Id 61349
Location 11q13.2  [Link to chromosome band 11q13]
Location_base_pair Starts at 67455347 and ends at 67461774 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CLPB (11q13.4) / CABP4 (11q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CABP4   1386
Cards
Entrez_Gene (NCBI)CABP4  57010  calcium binding protein 4
AliasesCRSD; CSNB2B
GeneCards (Weizmann)CABP4
Ensembl hg19 (Hinxton)ENSG00000175544 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000175544 [Gene_View]  chr11:67455347-67461774 [Contig_View]  CABP4 [Vega]
ICGC DataPortalENSG00000175544
TCGA cBioPortalCABP4
AceView (NCBI)CABP4
Genatlas (Paris)CABP4
WikiGenes57010
SOURCE (Princeton)CABP4
Genetics Home Reference (NIH)CABP4
Genomic and cartography
GoldenPath hg38 (UCSC)CABP4  -     chr11:67455347-67461774 +  11q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CABP4  -     11q13.2   [Description]    (hg19-Feb_2009)
EnsemblCABP4 - 11q13.2 [CytoView hg19]  CABP4 - 11q13.2 [CytoView hg38]
Mapping of homologs : NCBICABP4 [Mapview hg19]  CABP4 [Mapview hg38]
OMIM608965   610427   
Gene and transcription
Genbank (Entrez)AK311199 AL712439 AY039217 BC033167 BM665388
RefSeq transcript (Entrez)NM_001300895 NM_001300896 NM_145200
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CABP4
Cluster EST : UnigeneHs.734577 [ NCBI ]
CGAP (NCI)Hs.734577
Alternative Splicing GalleryENSG00000175544
Gene ExpressionCABP4 [ NCBI-GEO ]   CABP4 [ EBI - ARRAY_EXPRESS ]   CABP4 [ SEEK ]   CABP4 [ MEM ]
Gene Expression Viewer (FireBrowse)CABP4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57010
GTEX Portal (Tissue expression)CABP4
Protein : pattern, domain, 3D structure
UniProt/SwissProtP57796   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP57796  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP57796
Splice isoforms : SwissVarP57796
PhosPhoSitePlusP57796
Domaine pattern : Prosite (Expaxy)EF_HAND_1 (PS00018)    EF_HAND_2 (PS50222)   
Domains : Interpro (EBI)CABP4    EF-hand-dom_pair    EF_Hand_1_Ca_BS    EF_hand_dom   
Domain families : Pfam (Sanger)EF-hand_1 (PF00036)    EF-hand_7 (PF13499)   
Domain families : Pfam (NCBI)pfam00036    pfam13499   
Domain families : Smart (EMBL)EFh (SM00054)  
Conserved Domain (NCBI)CABP4
DMDM Disease mutations57010
Blocks (Seattle)CABP4
SuperfamilyP57796
Human Protein AtlasENSG00000175544
Peptide AtlasP57796
HPRD12344
IPIIPI00028089   IPI00166824   IPI01011818   
Protein Interaction databases
DIP (DOE-UCLA)P57796
IntAct (EBI)P57796
FunCoupENSG00000175544
BioGRIDCABP4
STRING (EMBL)CABP4
ZODIACCABP4
Ontologies - Pathways
QuickGOP57796
Ontology : AmiGOcalcium channel regulator activity  calcium ion binding  calcium ion binding  extracellular region  cytosol  signal transduction  visual perception  phototransduction  photoreceptor cell morphogenesis  terminal bouton  ion channel binding  synapse  retinal cone cell development  retinal bipolar neuron differentiation  regulation of molecular function  
Ontology : EGO-EBIcalcium channel regulator activity  calcium ion binding  calcium ion binding  extracellular region  cytosol  signal transduction  visual perception  phototransduction  photoreceptor cell morphogenesis  terminal bouton  ion channel binding  synapse  retinal cone cell development  retinal bipolar neuron differentiation  regulation of molecular function  
NDEx NetworkCABP4
Atlas of Cancer Signalling NetworkCABP4
Wikipedia pathwaysCABP4
Orthology - Evolution
OrthoDB57010
GeneTree (enSembl)ENSG00000175544
Phylogenetic Trees/Animal Genes : TreeFamCABP4
HOVERGENP57796
HOGENOMP57796
Homologs : HomoloGeneCABP4
Homology/Alignments : Family Browser (UCSC)CABP4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCABP4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CABP4
dbVarCABP4
ClinVarCABP4
1000_GenomesCABP4 
Exome Variant ServerCABP4
ExAC (Exome Aggregation Consortium)CABP4 (select the gene name)
Genetic variants : HAPMAP57010
Genomic Variants (DGV)CABP4 [DGVbeta]
DECIPHERCABP4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCABP4 
Mutations
ICGC Data PortalCABP4 
TCGA Data PortalCABP4 
Broad Tumor PortalCABP4
OASIS PortalCABP4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCABP4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCABP4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Eye diseases - LOVD
BioMutasearch CABP4
DgiDB (Drug Gene Interaction Database)CABP4
DoCM (Curated mutations)CABP4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CABP4 (select a term)
intoGenCABP4
Cancer3DCABP4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608965    610427   
Orphanet923   
MedgenCABP4
Genetic Testing Registry CABP4
NextProtP57796 [Medical]
TSGene57010
GENETestsCABP4
Target ValidationCABP4
Huge Navigator CABP4 [HugePedia]
snp3D : Map Gene to Disease57010
BioCentury BCIQCABP4
ClinGenCABP4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57010
Chemical/Pharm GKB GenePA26003
Clinical trialCABP4
Miscellaneous
canSAR (ICR)CABP4 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCABP4
EVEXCABP4
GoPubMedCABP4
iHOPCABP4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:03:43 CEST 2017

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