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CABP5 (calcium binding protein 5)

Identity

Alias_namesCABP3
calcium binding protein 3
Alias_symbol (synonym)CaBP3
Other alias
HGNC (Hugo) CABP5
LocusID (NCBI) 56344
Atlas_Id 61350
Location 19q13.33  [Link to chromosome band 19q13]
Location_base_pair Starts at 48029383 and ends at 48044054 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CABP5   13714
Cards
Entrez_Gene (NCBI)CABP5  56344  calcium binding protein 5
AliasesCABP3
GeneCards (Weizmann)CABP5
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr19:48029383-48044054 [Contig_View]  CABP5 [Vega]
TCGA cBioPortalCABP5
AceView (NCBI)CABP5
Genatlas (Paris)CABP5
WikiGenes56344
SOURCE (Princeton)CABP5
Genetics Home Reference (NIH)CABP5
Genomic and cartography
GoldenPath hg38 (UCSC)CABP5  -     chr19:48029383-48044054 -  19q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CABP5  -     19q13.33   [Description]    (hg19-Feb_2009)
EnsemblCABP5 - 19q13.33 [CytoView hg19]  CABP5 - 19q13.33 [CytoView hg38]
Mapping of homologs : NCBICABP5 [Mapview hg19]  CABP5 [Mapview hg38]
OMIM607315   
Gene and transcription
Genbank (Entrez)AA318398 AF169159 BC126133 BC126135 BQ185108
RefSeq transcript (Entrez)NM_016367 NM_019855
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CABP5
Cluster EST : UnigeneHs.117694 [ NCBI ]
CGAP (NCI)Hs.117694
Gene ExpressionCABP5 [ NCBI-GEO ]   CABP5 [ EBI - ARRAY_EXPRESS ]   CABP5 [ SEEK ]   CABP5 [ MEM ]
Gene Expression Viewer (FireBrowse)CABP5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56344
GTEX Portal (Tissue expression)CABP5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NP86   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NP86  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NP86
Splice isoforms : SwissVarQ9NP86
PhosPhoSitePlusQ9NP86
Domaine pattern : Prosite (Expaxy)EF_HAND_1 (PS00018)    EF_HAND_2 (PS50222)   
Domains : Interpro (EBI)EF-hand-dom_pair    EF_Hand_1_Ca_BS    EF_hand_dom   
Domain families : Pfam (Sanger)EF-hand_7 (PF13499)   
Domain families : Pfam (NCBI)pfam13499   
Domain families : Smart (EMBL)EFh (SM00054)  
Conserved Domain (NCBI)CABP5
DMDM Disease mutations56344
Blocks (Seattle)CABP5
SuperfamilyQ9NP86
Peptide AtlasQ9NP86
HPRD09537
IPIIPI00014595   
Protein Interaction databases
DIP (DOE-UCLA)Q9NP86
IntAct (EBI)Q9NP86
BioGRIDCABP5
STRING (EMBL)CABP5
ZODIACCABP5
Ontologies - Pathways
QuickGOQ9NP86
Ontology : AmiGOcalcium ion binding  protein binding  cytosol  signal transduction  
Ontology : EGO-EBIcalcium ion binding  protein binding  cytosol  signal transduction  
NDEx NetworkCABP5
Atlas of Cancer Signalling NetworkCABP5
Wikipedia pathwaysCABP5
Orthology - Evolution
OrthoDB56344
Phylogenetic Trees/Animal Genes : TreeFamCABP5
HOVERGENQ9NP86
HOGENOMQ9NP86
Homologs : HomoloGeneCABP5
Homology/Alignments : Family Browser (UCSC)CABP5
Gene fusions - Rearrangements
Tumor Fusion PortalCABP5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCABP5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CABP5
dbVarCABP5
ClinVarCABP5
1000_GenomesCABP5 
Exome Variant ServerCABP5
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP56344
Genomic Variants (DGV)CABP5 [DGVbeta]
DECIPHERCABP5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCABP5 
Mutations
ICGC Data PortalCABP5 
TCGA Data PortalCABP5 
Broad Tumor PortalCABP5
OASIS PortalCABP5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCABP5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCABP5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CABP5
DgiDB (Drug Gene Interaction Database)CABP5
DoCM (Curated mutations)CABP5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CABP5 (select a term)
intoGenCABP5
Cancer3DCABP5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607315   
Orphanet
DisGeNETCABP5
MedgenCABP5
Genetic Testing Registry CABP5
NextProtQ9NP86 [Medical]
TSGene56344
GENETestsCABP5
Target ValidationCABP5
Huge Navigator CABP5 [HugePedia]
snp3D : Map Gene to Disease56344
BioCentury BCIQCABP5
ClinGenCABP5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56344
Chemical/Pharm GKB GenePA26004
Clinical trialCABP5
Miscellaneous
canSAR (ICR)CABP5 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCABP5
EVEXCABP5
GoPubMedCABP5
iHOPCABP5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:38:15 CET 2017

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