Atlas of Genetics and Cytogenetics in Oncology and Haematology

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CABP7 (calcium binding protein 7)

Identity

Alias (NCBI)CALN2
HGNC (Hugo) CABP7
HGNC Alias symbMGC57793
LocusID (NCBI) 164633
Atlas_Id 61351
Location 22q12.2  [Link to chromosome band 22q12]
Location_base_pair Starts at 29720355 and ends at 29731831 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CABP7 (22q12.2) / ZMAT5 (22q12.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 2 ]
  CABP7/NF2 (22q12)
NF2/CABP7 (22q12)

External links

Nomenclature
HGNC (Hugo)CABP7   20834
Cards
Entrez_Gene (NCBI)CABP7    calcium binding protein 7
AliasesCALN2
GeneCards (Weizmann)CABP7
Ensembl hg19 (Hinxton)ENSG00000100314 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000100314 [Gene_View]  ENSG00000100314 [Sequence]  chr22:29720355-29731831 [Contig_View]  CABP7 [Vega]
ICGC DataPortalENSG00000100314
TCGA cBioPortalCABP7
AceView (NCBI)CABP7
Genatlas (Paris)CABP7
SOURCE (Princeton)CABP7
Genetics Home Reference (NIH)CABP7
Genomic and cartography
GoldenPath hg38 (UCSC)CABP7  -     chr22:29720355-29731831 +  22q12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CABP7  -     22q12.2   [Description]    (hg19-Feb_2009)
GoldenPathCABP7 - 22q12.2 [CytoView hg19]  CABP7 - 22q12.2 [CytoView hg38]
ImmunoBaseENSG00000100314
genome Data Viewer NCBICABP7 [Mapview hg19]  
OMIM618759   
Gene and transcription
Genbank (Entrez)AA351919 BC051805 BX488512
RefSeq transcript (Entrez)NM_182527
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CABP7
Alternative Splicing GalleryENSG00000100314
Gene ExpressionCABP7 [ NCBI-GEO ]   CABP7 [ EBI - ARRAY_EXPRESS ]   CABP7 [ SEEK ]   CABP7 [ MEM ]
Gene Expression Viewer (FireBrowse)CABP7 [ Firebrowse - Broad ]
GenevisibleExpression of CABP7 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)164633
GTEX Portal (Tissue expression)CABP7
Human Protein AtlasENSG00000100314-CABP7 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86V35   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86V35  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86V35
Splice isoforms : SwissVarQ86V35
PhosPhoSitePlusQ86V35
Domaine pattern : Prosite (Expaxy)EF_HAND_1 (PS00018)    EF_HAND_2 (PS50222)   
Domains : Interpro (EBI)EF-hand-dom_pair    EF_Hand_1_Ca_BS    EF_hand_dom    S100/CaBP-9k_CS   
Domain families : Pfam (Sanger)EF-hand_7 (PF13499)   
Domain families : Pfam (NCBI)pfam13499   
Domain families : Smart (EMBL)EFh (SM00054)  
Conserved Domain (NCBI)CABP7
Blocks (Seattle)CABP7
PDB (RSDB)2LV7   
PDB Europe2LV7   
PDB (PDBSum)2LV7   
PDB (IMB)2LV7   
Structural Biology KnowledgeBase2LV7   
SCOP (Structural Classification of Proteins)2LV7   
CATH (Classification of proteins structures)2LV7   
SuperfamilyQ86V35
Human Protein Atlas [tissue]ENSG00000100314-CABP7 [tissue]
Peptide AtlasQ86V35
HPRD12995
IPIIPI00095870   
Protein Interaction databases
DIP (DOE-UCLA)Q86V35
IntAct (EBI)Q86V35
BioGRIDCABP7
STRING (EMBL)CABP7
ZODIACCABP7
Ontologies - Pathways
QuickGOQ86V35
Ontology : AmiGOcalcium ion binding  plasma membrane  integral component of membrane  trans-Golgi network membrane  perinuclear region of cytoplasm  
Ontology : EGO-EBIcalcium ion binding  plasma membrane  integral component of membrane  trans-Golgi network membrane  perinuclear region of cytoplasm  
NDEx NetworkCABP7
Atlas of Cancer Signalling NetworkCABP7
Wikipedia pathwaysCABP7
Orthology - Evolution
OrthoDB164633
GeneTree (enSembl)ENSG00000100314
Phylogenetic Trees/Animal Genes : TreeFamCABP7
HOGENOMQ86V35
Homologs : HomoloGeneCABP7
Homology/Alignments : Family Browser (UCSC)CABP7
Gene fusions - Rearrangements
Fusion : QuiverCABP7
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCABP7 [hg38]
dbVarCABP7
ClinVarCABP7
MonarchCABP7
1000_GenomesCABP7 
Exome Variant ServerCABP7
GNOMAD BrowserENSG00000100314
Varsome BrowserCABP7
Genomic Variants (DGV)CABP7 [DGVbeta]
DECIPHERCABP7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCABP7 
Mutations
ICGC Data PortalCABP7 
TCGA Data PortalCABP7 
Broad Tumor PortalCABP7
OASIS PortalCABP7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCABP7  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCABP7
Mutations and Diseases : HGMDCABP7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CABP7
DgiDB (Drug Gene Interaction Database)CABP7
DoCM (Curated mutations)CABP7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CABP7 (select a term)
intoGenCABP7
Cancer3DCABP7(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM618759   
Orphanet
DisGeNETCABP7
MedgenCABP7
Genetic Testing Registry CABP7
NextProtQ86V35 [Medical]
GENETestsCABP7
Target ValidationCABP7
Huge Navigator CABP7 [HugePedia]
ClinGenCABP7
Clinical trials, drugs, therapy
MyCancerGenomeCABP7
Protein Interactions : CTD
Pharm GKB GenePA134928335
Clinical trialCABP7
Miscellaneous
canSAR (ICR)CABP7 (select the gene name)
HarmonizomeCABP7
DataMed IndexCABP7
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCABP7
EVEXCABP7
GoPubMedCABP7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 16:48:31 CET 2020
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