Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CABP7 (calcium binding protein 7)

Identity

Alias_symbol (synonym)MGC57793
Other aliasCALN2
HGNC (Hugo) CABP7
LocusID (NCBI) 164633
Atlas_Id 61351
Location 22q12.2  [Link to chromosome band 22q12]
Location_base_pair Starts at 29720355 and ends at 29731831 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CABP7 (22q12.2) / ZMAT5 (22q12.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CABP7   20834
Cards
Entrez_Gene (NCBI)CABP7  164633  calcium binding protein 7
AliasesCALN2
GeneCards (Weizmann)CABP7
Ensembl hg19 (Hinxton)ENSG00000100314 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000100314 [Gene_View]  chr22:29720355-29731831 [Contig_View]  CABP7 [Vega]
ICGC DataPortalENSG00000100314
TCGA cBioPortalCABP7
AceView (NCBI)CABP7
Genatlas (Paris)CABP7
WikiGenes164633
SOURCE (Princeton)CABP7
Genetics Home Reference (NIH)CABP7
Genomic and cartography
GoldenPath hg38 (UCSC)CABP7  -     chr22:29720355-29731831 +  22q12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CABP7  -     22q12.2   [Description]    (hg19-Feb_2009)
EnsemblCABP7 - 22q12.2 [CytoView hg19]  CABP7 - 22q12.2 [CytoView hg38]
Mapping of homologs : NCBICABP7 [Mapview hg19]  CABP7 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA351919 BC051805 BX488512 HQ257899
RefSeq transcript (Entrez)NM_182527
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CABP7
Cluster EST : UnigeneHs.643608 [ NCBI ]
CGAP (NCI)Hs.643608
Alternative Splicing GalleryENSG00000100314
Gene ExpressionCABP7 [ NCBI-GEO ]   CABP7 [ EBI - ARRAY_EXPRESS ]   CABP7 [ SEEK ]   CABP7 [ MEM ]
Gene Expression Viewer (FireBrowse)CABP7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)164633
GTEX Portal (Tissue expression)CABP7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86V35   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86V35  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86V35
Splice isoforms : SwissVarQ86V35
PhosPhoSitePlusQ86V35
Domaine pattern : Prosite (Expaxy)EF_HAND_1 (PS00018)    EF_HAND_2 (PS50222)   
Domains : Interpro (EBI)EF-hand-dom_pair    EF_Hand_1_Ca_BS    EF_hand_dom    S100/CaBP-9k_CS   
Domain families : Pfam (Sanger)EF-hand_7 (PF13499)   
Domain families : Pfam (NCBI)pfam13499   
Domain families : Smart (EMBL)EFh (SM00054)  
Conserved Domain (NCBI)CABP7
DMDM Disease mutations164633
Blocks (Seattle)CABP7
PDB (SRS)2LV7   
PDB (PDBSum)2LV7   
PDB (IMB)2LV7   
PDB (RSDB)2LV7   
Structural Biology KnowledgeBase2LV7   
SCOP (Structural Classification of Proteins)2LV7   
CATH (Classification of proteins structures)2LV7   
SuperfamilyQ86V35
Human Protein AtlasENSG00000100314
Peptide AtlasQ86V35
HPRD12995
IPIIPI00095870   
Protein Interaction databases
DIP (DOE-UCLA)Q86V35
IntAct (EBI)Q86V35
FunCoupENSG00000100314
BioGRIDCABP7
STRING (EMBL)CABP7
ZODIACCABP7
Ontologies - Pathways
QuickGOQ86V35
Ontology : AmiGOcalcium ion binding  plasma membrane  integral component of membrane  trans-Golgi network membrane  perinuclear region of cytoplasm  
Ontology : EGO-EBIcalcium ion binding  plasma membrane  integral component of membrane  trans-Golgi network membrane  perinuclear region of cytoplasm  
NDEx NetworkCABP7
Atlas of Cancer Signalling NetworkCABP7
Wikipedia pathwaysCABP7
Orthology - Evolution
OrthoDB164633
GeneTree (enSembl)ENSG00000100314
Phylogenetic Trees/Animal Genes : TreeFamCABP7
HOVERGENQ86V35
HOGENOMQ86V35
Homologs : HomoloGeneCABP7
Homology/Alignments : Family Browser (UCSC)CABP7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCABP7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CABP7
dbVarCABP7
ClinVarCABP7
1000_GenomesCABP7 
Exome Variant ServerCABP7
ExAC (Exome Aggregation Consortium)CABP7 (select the gene name)
Genetic variants : HAPMAP164633
Genomic Variants (DGV)CABP7 [DGVbeta]
DECIPHERCABP7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCABP7 
Mutations
ICGC Data PortalCABP7 
TCGA Data PortalCABP7 
Broad Tumor PortalCABP7
OASIS PortalCABP7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCABP7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCABP7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CABP7
DgiDB (Drug Gene Interaction Database)CABP7
DoCM (Curated mutations)CABP7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CABP7 (select a term)
intoGenCABP7
Cancer3DCABP7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCABP7
Genetic Testing Registry CABP7
NextProtQ86V35 [Medical]
TSGene164633
GENETestsCABP7
Target ValidationCABP7
Huge Navigator CABP7 [HugePedia]
snp3D : Map Gene to Disease164633
BioCentury BCIQCABP7
ClinGenCABP7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD164633
Chemical/Pharm GKB GenePA134928335
Clinical trialCABP7
Miscellaneous
canSAR (ICR)CABP7 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCABP7
EVEXCABP7
GoPubMedCABP7
iHOPCABP7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:03:43 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.