Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CABS1 (calcium binding protein, spermatid associated 1)

Identity

Alias_namesC4orf35
chromosome 4 open reading frame 35
calcium-binding protein, spermatid-specific 1
Alias_symbol (synonym)NYD-SP26
FLJ32897
CLPH
Other alias
HGNC (Hugo) CABS1
LocusID (NCBI) 85438
Atlas_Id 61352
Location 4q13.3  [Link to chromosome band 4q13]
Location_base_pair Starts at 70334954 and ends at 70337116 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CABS1   30710
Cards
Entrez_Gene (NCBI)CABS1  85438  calcium binding protein, spermatid associated 1
AliasesC4orf35; CLPH; NYD-SP26
GeneCards (Weizmann)CABS1
Ensembl hg19 (Hinxton)ENSG00000145309 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000145309 [Gene_View]  chr4:70334954-70337116 [Contig_View]  CABS1 [Vega]
ICGC DataPortalENSG00000145309
TCGA cBioPortalCABS1
AceView (NCBI)CABS1
Genatlas (Paris)CABS1
WikiGenes85438
SOURCE (Princeton)CABS1
Genetics Home Reference (NIH)CABS1
Genomic and cartography
GoldenPath hg38 (UCSC)CABS1  -     chr4:70334954-70337116 +  4q13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CABS1  -     4q13.3   [Description]    (hg19-Feb_2009)
EnsemblCABS1 - 4q13.3 [CytoView hg19]  CABS1 - 4q13.3 [CytoView hg38]
Mapping of homologs : NCBICABS1 [Mapview hg19]  CABS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF380838 AK057459 AK315022 BC034492 BC046111
RefSeq transcript (Entrez)NM_033122
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CABS1
Cluster EST : UnigeneHs.120316 [ NCBI ]
CGAP (NCI)Hs.120316
Alternative Splicing GalleryENSG00000145309
Gene ExpressionCABS1 [ NCBI-GEO ]   CABS1 [ EBI - ARRAY_EXPRESS ]   CABS1 [ SEEK ]   CABS1 [ MEM ]
Gene Expression Viewer (FireBrowse)CABS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)85438
GTEX Portal (Tissue expression)CABS1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96KC9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96KC9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96KC9
Splice isoforms : SwissVarQ96KC9
PhosPhoSitePlusQ96KC9
Domains : Interpro (EBI)Ca-bd_spermatid   
Domain families : Pfam (Sanger)CABS1 (PF15367)   
Domain families : Pfam (NCBI)pfam15367   
Conserved Domain (NCBI)CABS1
DMDM Disease mutations85438
Blocks (Seattle)CABS1
SuperfamilyQ96KC9
Human Protein AtlasENSG00000145309
Peptide AtlasQ96KC9
HPRD14865
IPIIPI00328711   
Protein Interaction databases
DIP (DOE-UCLA)Q96KC9
IntAct (EBI)Q96KC9
FunCoupENSG00000145309
BioGRIDCABS1
STRING (EMBL)CABS1
ZODIACCABS1
Ontologies - Pathways
QuickGOQ96KC9
Ontology : AmiGOcalcium ion binding  calcium ion binding  mitochondrial inner membrane  spermatogenesis  motile cilium  motile cilium  
Ontology : EGO-EBIcalcium ion binding  calcium ion binding  mitochondrial inner membrane  spermatogenesis  motile cilium  motile cilium  
NDEx NetworkCABS1
Atlas of Cancer Signalling NetworkCABS1
Wikipedia pathwaysCABS1
Orthology - Evolution
OrthoDB85438
GeneTree (enSembl)ENSG00000145309
Phylogenetic Trees/Animal Genes : TreeFamCABS1
HOVERGENQ96KC9
HOGENOMQ96KC9
Homologs : HomoloGeneCABS1
Homology/Alignments : Family Browser (UCSC)CABS1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCABS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CABS1
dbVarCABS1
ClinVarCABS1
1000_GenomesCABS1 
Exome Variant ServerCABS1
ExAC (Exome Aggregation Consortium)CABS1 (select the gene name)
Genetic variants : HAPMAP85438
Genomic Variants (DGV)CABS1 [DGVbeta]
DECIPHERCABS1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCABS1 
Mutations
ICGC Data PortalCABS1 
TCGA Data PortalCABS1 
Broad Tumor PortalCABS1
OASIS PortalCABS1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCABS1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCABS1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CABS1
DgiDB (Drug Gene Interaction Database)CABS1
DoCM (Curated mutations)CABS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CABS1 (select a term)
intoGenCABS1
Cancer3DCABS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCABS1
Genetic Testing Registry CABS1
NextProtQ96KC9 [Medical]
TSGene85438
GENETestsCABS1
Target ValidationCABS1
Huge Navigator CABS1 [HugePedia]
snp3D : Map Gene to Disease85438
BioCentury BCIQCABS1
ClinGenCABS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD85438
Chemical/Pharm GKB GenePA162379775
Clinical trialCABS1
Miscellaneous
canSAR (ICR)CABS1 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCABS1
EVEXCABS1
GoPubMedCABS1
iHOPCABS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:03:43 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.