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CABYR (calcium binding tyrosine phosphorylation regulated)

Identity

Alias_namescalcium binding tyrosine-(Y)-phosphorylation regulated
Alias_symbol (synonym)FSP-2
CBP86
CT88
Other aliasCABYRa
CABYRc
CABYRc/d
CABYRe
FSP2
HGNC (Hugo) CABYR
LocusID (NCBI) 26256
Atlas_Id 52313
Location 18q11.2  [Link to chromosome band 18q11]
Location_base_pair Starts at 24138956 and ends at 24160069 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
MT1A (16q12.2) / CABYR (18q11.2)ROCK1 (18q11.1) / CABYR (18q11.2)ROCK1 18q11.1 / CABYR 18q11.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CABYR   15569
Cards
Entrez_Gene (NCBI)CABYR  26256  calcium binding tyrosine phosphorylation regulated
AliasesCABYRa; CABYRc; CABYRc/d; CABYRe; 
CBP86; CT88; FSP-2; FSP2
GeneCards (Weizmann)CABYR
Ensembl hg19 (Hinxton)ENSG00000154040 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000154040 [Gene_View]  chr18:24138956-24160069 [Contig_View]  CABYR [Vega]
ICGC DataPortalENSG00000154040
TCGA cBioPortalCABYR
AceView (NCBI)CABYR
Genatlas (Paris)CABYR
WikiGenes26256
SOURCE (Princeton)CABYR
Genetics Home Reference (NIH)CABYR
Genomic and cartography
GoldenPath hg38 (UCSC)CABYR  -     chr18:24138956-24160069 +  18q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CABYR  -     18q11.2   [Description]    (hg19-Feb_2009)
EnsemblCABYR - 18q11.2 [CytoView hg19]  CABYR - 18q11.2 [CytoView hg38]
Mapping of homologs : NCBICABYR [Mapview hg19]  CABYR [Mapview hg38]
OMIM612135   
Gene and transcription
Genbank (Entrez)AF088868 AF295037 AF295038 AF295039 AF329634
RefSeq transcript (Entrez)NM_001308231 NM_012189 NM_138643 NM_138644 NM_153768 NM_153769 NM_153770
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CABYR
Cluster EST : UnigeneHs.511983 [ NCBI ]
CGAP (NCI)Hs.511983
Alternative Splicing GalleryENSG00000154040
Gene ExpressionCABYR [ NCBI-GEO ]   CABYR [ EBI - ARRAY_EXPRESS ]   CABYR [ SEEK ]   CABYR [ MEM ]
Gene Expression Viewer (FireBrowse)CABYR [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26256
GTEX Portal (Tissue expression)CABYR
Human Protein AtlasENSG00000154040-CABYR [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75952   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75952  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75952
Splice isoforms : SwissVarO75952
PhosPhoSitePlusO75952
Domains : Interpro (EBI)cAMP_dep_PK_reg_su_I/II_a/b   
Domain families : Pfam (Sanger)RIIa (PF02197)   
Domain families : Pfam (NCBI)pfam02197   
Domain families : Smart (EMBL)RIIa (SM00394)  
Conserved Domain (NCBI)CABYR
DMDM Disease mutations26256
Blocks (Seattle)CABYR
SuperfamilyO75952
Human Protein Atlas [tissue]ENSG00000154040-CABYR [tissue]
Peptide AtlasO75952
HPRD10806
IPIIPI00290834   IPI00237334   IPI00032864   IPI00307214   IPI00170620   IPI00642583   
Protein Interaction databases
DIP (DOE-UCLA)O75952
IntAct (EBI)O75952
FunCoupENSG00000154040
BioGRIDCABYR
STRING (EMBL)CABYR
ZODIACCABYR
Ontologies - Pathways
QuickGOO75952
Ontology : AmiGOepithelial cilium movement  calcium ion binding  nucleus  cytoplasm  cytosol  cytoskeleton  SH3 domain binding  motile cilium  sperm fibrous sheath  protein heterodimerization activity  sperm capacitation  sperm principal piece  sperm end piece  
Ontology : EGO-EBIepithelial cilium movement  calcium ion binding  nucleus  cytoplasm  cytosol  cytoskeleton  SH3 domain binding  motile cilium  sperm fibrous sheath  protein heterodimerization activity  sperm capacitation  sperm principal piece  sperm end piece  
NDEx NetworkCABYR
Atlas of Cancer Signalling NetworkCABYR
Wikipedia pathwaysCABYR
Orthology - Evolution
OrthoDB26256
GeneTree (enSembl)ENSG00000154040
Phylogenetic Trees/Animal Genes : TreeFamCABYR
HOVERGENO75952
HOGENOMO75952
Homologs : HomoloGeneCABYR
Homology/Alignments : Family Browser (UCSC)CABYR
Gene fusions - Rearrangements
Fusion : MitelmanROCK1/CABYR [18q11.1/18q11.2]  [t(18;18)(q11;q11)]  
Fusion: TCGAROCK1 18q11.1 CABYR 18q11.2 LUAD
Fusion: Tumor Portal CABYR
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCABYR [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CABYR
dbVarCABYR
ClinVarCABYR
1000_GenomesCABYR 
Exome Variant ServerCABYR
ExAC (Exome Aggregation Consortium)ENSG00000154040
GNOMAD BrowserENSG00000154040
Genetic variants : HAPMAP26256
Genomic Variants (DGV)CABYR [DGVbeta]
DECIPHERCABYR [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCABYR 
Mutations
ICGC Data PortalCABYR 
TCGA Data PortalCABYR 
Broad Tumor PortalCABYR
OASIS PortalCABYR [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCABYR  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCABYR
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CABYR
DgiDB (Drug Gene Interaction Database)CABYR
DoCM (Curated mutations)CABYR (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CABYR (select a term)
intoGenCABYR
Cancer3DCABYR(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612135   
Orphanet
MedgenCABYR
Genetic Testing Registry CABYR
NextProtO75952 [Medical]
TSGene26256
GENETestsCABYR
Target ValidationCABYR
Huge Navigator CABYR [HugePedia]
snp3D : Map Gene to Disease26256
BioCentury BCIQCABYR
ClinGenCABYR
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26256
Chemical/Pharm GKB GenePA26005
Clinical trialCABYR
Miscellaneous
canSAR (ICR)CABYR (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCABYR
EVEXCABYR
GoPubMedCABYR
iHOPCABYR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:42:49 CET 2017

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