Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CABYR (calcium binding tyrosine phosphorylation regulated)

Identity

Alias (NCBI)CABYRa
CABYRc
CABYRc/d
CABYRe
CBP86
CT88
FSP-2
FSP2
HGNC (Hugo) CABYR
HGNC Alias symbFSP-2
CBP86
CT88
HGNC Alias namefibrousheathin 2
 cancer/testis antigen 88
HGNC Previous namecalcium binding tyrosine-(Y)-phosphorylation regulated
LocusID (NCBI) 26256
Atlas_Id 52313
Location 18q11.2  [Link to chromosome band 18q11]
Location_base_pair Starts at 24139062 and ends at 24161600 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
MT1A (16q12.2)::CABYR (18q11.2)ROCK1 (18q11.1)::CABYR (18q11.2)ROCK1 18q11.1::CABYR 18q11.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)CABYR   15569
Cards
Entrez_Gene (NCBI)CABYR    calcium binding tyrosine phosphorylation regulated
AliasesCABYRa; CABYRc; CABYRc/d; CABYRe; 
CBP86; CT88; FSP-2; FSP2
GeneCards (Weizmann)CABYR
Ensembl hg19 (Hinxton)ENSG00000154040 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000154040 [Gene_View]  ENSG00000154040 [Sequence]  chr18:24139062-24161600 [Contig_View]  CABYR [Vega]
ICGC DataPortalENSG00000154040
TCGA cBioPortalCABYR
AceView (NCBI)CABYR
Genatlas (Paris)CABYR
SOURCE (Princeton)CABYR
Genetics Home Reference (NIH)CABYR
Genomic and cartography
GoldenPath hg38 (UCSC)CABYR  -     chr18:24139062-24161600 +  18q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CABYR  -     18q11.2   [Description]    (hg19-Feb_2009)
GoldenPathCABYR - 18q11.2 [CytoView hg19]  CABYR - 18q11.2 [CytoView hg38]
ImmunoBaseENSG00000154040
Genome Data Viewer NCBICABYR [Mapview hg19]  
OMIM612135   
Gene and transcription
Genbank (Entrez)AF088868 AF295037 AF295038 AF295039 AF329634
RefSeq transcript (Entrez)NM_001308231 NM_012189 NM_138643 NM_138644 NM_153768 NM_153769 NM_153770
Consensus coding sequences : CCDS (NCBI)CABYR
Gene ExpressionCABYR [ NCBI-GEO ]   CABYR [ EBI - ARRAY_EXPRESS ]   CABYR [ SEEK ]   CABYR [ MEM ]
Gene Expression Viewer (FireBrowse)CABYR [ Firebrowse - Broad ]
GenevisibleExpression of CABYR in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26256
GTEX Portal (Tissue expression)CABYR
Human Protein AtlasENSG00000154040-CABYR [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75952   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75952  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75952
PhosPhoSitePlusO75952
Domains : Interpro (EBI)CABYR    cAMP_dep_PK_reg_su_I/II_a/b   
Domain families : Pfam (Sanger)RIIa (PF02197)   
Domain families : Pfam (NCBI)pfam02197   
Domain families : Smart (EMBL)RIIa (SM00394)  
Conserved Domain (NCBI)CABYR
SuperfamilyO75952
AlphaFold pdb e-kbO75952   
Human Protein Atlas [tissue]ENSG00000154040-CABYR [tissue]
HPRD10806
Protein Interaction databases
DIP (DOE-UCLA)O75952
IntAct (EBI)O75952
BioGRIDCABYR
STRING (EMBL)CABYR
ZODIACCABYR
Ontologies - Pathways
QuickGOO75952
Ontology : AmiGOepithelial cilium movement involved in extracellular fluid movement  calcium ion binding  calcium ion binding  extracellular region  nucleus  nucleoplasm  cytoplasm  cytoplasm  cytosol  cytoskeleton  SH3 domain binding  motile cilium  sperm fibrous sheath  sperm fibrous sheath  sperm capacitation  
Ontology : EGO-EBIepithelial cilium movement involved in extracellular fluid movement  calcium ion binding  calcium ion binding  extracellular region  nucleus  nucleoplasm  cytoplasm  cytoplasm  cytosol  cytoskeleton  SH3 domain binding  motile cilium  sperm fibrous sheath  sperm fibrous sheath  sperm capacitation  
NDEx NetworkCABYR
Atlas of Cancer Signalling NetworkCABYR
Wikipedia pathwaysCABYR
Orthology - Evolution
OrthoDB26256
GeneTree (enSembl)ENSG00000154040
Phylogenetic Trees/Animal Genes : TreeFamCABYR
Homologs : HomoloGeneCABYR
Homology/Alignments : Family Browser (UCSC)CABYR
Gene fusions - Rearrangements
Fusion : MitelmanROCK1::CABYR [18q11.1/18q11.2]  
Fusion : QuiverCABYR
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCABYR [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CABYR
dbVarCABYR
ClinVarCABYR
MonarchCABYR
1000_GenomesCABYR 
Exome Variant ServerCABYR
GNOMAD BrowserENSG00000154040
Varsome BrowserCABYR
ACMGCABYR variants
VarityO75952
Genomic Variants (DGV)CABYR [DGVbeta]
DECIPHERCABYR [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCABYR 
Mutations
ICGC Data PortalCABYR 
TCGA Data PortalCABYR 
Broad Tumor PortalCABYR
OASIS PortalCABYR [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCABYR  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCABYR
Mutations and Diseases : HGMDCABYR
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaCABYR
DgiDB (Drug Gene Interaction Database)CABYR
DoCM (Curated mutations)CABYR
CIViC (Clinical Interpretations of Variants in Cancer)CABYR
Cancer3DCABYR
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612135   
Orphanet
DisGeNETCABYR
MedgenCABYR
Genetic Testing Registry CABYR
NextProtO75952 [Medical]
GENETestsCABYR
Target ValidationCABYR
Huge Navigator CABYR [HugePedia]
ClinGenCABYR
Clinical trials, drugs, therapy
MyCancerGenomeCABYR
Protein Interactions : CTDCABYR
Pharm GKB GenePA26005
PharosO75952
Clinical trialCABYR
Miscellaneous
canSAR (ICR)CABYR
HarmonizomeCABYR
ARCHS4CABYR
DataMed IndexCABYR
Probes
Litterature
PubMed31 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCABYR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jan 20 12:25:21 CET 2022

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