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CACFD1 (calcium channel flower domain containing 1)

Identity

Alias_namesC9orf7
chromosome 9 open reading frame 7
Alias_symbol (synonym)D9S2135
flower
Other aliasFLOWER
HGNC (Hugo) CACFD1
LocusID (NCBI) 11094
Atlas_Id 61353
Location 9q34.2  [Link to chromosome band 9q34]
Location_base_pair Starts at 136325087 and ends at 136335909 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CACFD1   1365
Cards
Entrez_Gene (NCBI)CACFD1  11094  calcium channel flower domain containing 1
AliasesC9orf7; D9S2135; FLOWER
GeneCards (Weizmann)CACFD1
Ensembl hg19 (Hinxton)ENSG00000160325 [Gene_View]  chr9:136325087-136335909 [Contig_View]  CACFD1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000160325 [Gene_View]  chr9:136325087-136335909 [Contig_View]  CACFD1 [Vega]
ICGC DataPortalENSG00000160325
TCGA cBioPortalCACFD1
AceView (NCBI)CACFD1
Genatlas (Paris)CACFD1
WikiGenes11094
SOURCE (Princeton)CACFD1
Genetics Home Reference (NIH)CACFD1
Genomic and cartography
GoldenPath hg19 (UCSC)CACFD1  -     chr9:136325087-136335909 +  9q34.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CACFD1  -     9q34.2   [Description]    (hg38-Dec_2013)
EnsemblCACFD1 - 9q34.2 [CytoView hg19]  CACFD1 - 9q34.2 [CytoView hg38]
Mapping of homologs : NCBICACFD1 [Mapview hg19]  CACFD1 [Mapview hg38]
OMIM613104   
Gene and transcription
Genbank (Entrez)AA436195 AJ011373 AK074852 AK075416 AK075548
RefSeq transcript (Entrez)NM_001135775 NM_001242369 NM_001242370 NM_017586
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929367 NW_009646201
Consensus coding sequences : CCDS (NCBI)CACFD1
Cluster EST : UnigeneHs.62003 [ NCBI ]
CGAP (NCI)Hs.62003
Alternative Splicing GalleryENSG00000160325
Gene ExpressionCACFD1 [ NCBI-GEO ]   CACFD1 [ EBI - ARRAY_EXPRESS ]   CACFD1 [ SEEK ]   CACFD1 [ MEM ]
Gene Expression Viewer (FireBrowse)CACFD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11094
GTEX Portal (Tissue expression)CACFD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UGQ2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UGQ2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UGQ2
Splice isoforms : SwissVarQ9UGQ2
PhosPhoSitePlusQ9UGQ2
Domains : Interpro (EBI)Ca-channel_flower    TVP18/Ca-channel_flower   
Domain families : Pfam (Sanger)Cg6151-P (PF10233)   
Domain families : Pfam (NCBI)pfam10233   
Domain families : Smart (EMBL)Cg6151-P (SM01077)  
Conserved Domain (NCBI)CACFD1
DMDM Disease mutations11094
Blocks (Seattle)CACFD1
SuperfamilyQ9UGQ2
Human Protein AtlasENSG00000160325
Peptide AtlasQ9UGQ2
HPRD12974
IPIIPI00014279   IPI00168285   IPI00922836   IPI01011071   IPI00922209   IPI00647606   
Protein Interaction databases
DIP (DOE-UCLA)Q9UGQ2
IntAct (EBI)Q9UGQ2
FunCoupENSG00000160325
BioGRIDCACFD1
STRING (EMBL)CACFD1
ZODIACCACFD1
Ontologies - Pathways
QuickGOQ9UGQ2
Ontology : AmiGOmolecular_function  calcium channel activity  protein binding  cellular_component  plasma membrane  synaptic transmission  biological_process  integral component of synaptic vesicle membrane  synaptic vesicle endocytosis  membrane depolarization  calcium ion transmembrane transport  calcium ion transmembrane transport  
Ontology : EGO-EBImolecular_function  calcium channel activity  protein binding  cellular_component  plasma membrane  synaptic transmission  biological_process  integral component of synaptic vesicle membrane  synaptic vesicle endocytosis  membrane depolarization  calcium ion transmembrane transport  calcium ion transmembrane transport  
NDEx NetworkCACFD1
Atlas of Cancer Signalling NetworkCACFD1
Wikipedia pathwaysCACFD1
Orthology - Evolution
OrthoDB11094
GeneTree (enSembl)ENSG00000160325
Phylogenetic Trees/Animal Genes : TreeFamCACFD1
HOVERGENQ9UGQ2
HOGENOMQ9UGQ2
Homologs : HomoloGeneCACFD1
Homology/Alignments : Family Browser (UCSC)CACFD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCACFD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CACFD1
dbVarCACFD1
ClinVarCACFD1
1000_GenomesCACFD1 
Exome Variant ServerCACFD1
ExAC (Exome Aggregation Consortium)CACFD1 (select the gene name)
Genetic variants : HAPMAP11094
Genomic Variants (DGV)CACFD1 [DGVbeta]
DECIPHER (Syndromes)9:136325087-136335909  ENSG00000160325
CONAN: Copy Number AnalysisCACFD1 
Mutations
ICGC Data PortalCACFD1 
TCGA Data PortalCACFD1 
Broad Tumor PortalCACFD1
OASIS PortalCACFD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCACFD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCACFD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CACFD1
DgiDB (Drug Gene Interaction Database)CACFD1
DoCM (Curated mutations)CACFD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CACFD1 (select a term)
intoGenCACFD1
Cancer3DCACFD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613104   
Orphanet
MedgenCACFD1
Genetic Testing Registry CACFD1
NextProtQ9UGQ2 [Medical]
TSGene11094
GENETestsCACFD1
Huge Navigator CACFD1 [HugePedia]
snp3D : Map Gene to Disease11094
BioCentury BCIQCACFD1
ClinGenCACFD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11094
Chemical/Pharm GKB GenePA25982
Clinical trialCACFD1
Miscellaneous
canSAR (ICR)CACFD1 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCACFD1
EVEXCACFD1
GoPubMedCACFD1
iHOPCACFD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:57:54 CET 2017

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