Atlas of Genetics and Cytogenetics in Oncology and Haematology

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CACNA1C-AS4 (CACNA1C antisense RNA 4)

Identity

Alias_namesCACNA1C antisense RNA 4 (non-protein coding)
Other alias-
HGNC (Hugo) CACNA1C-AS4
LocusID (NCBI) 100874234
Atlas_Id 61359
Location 12p13.33  [Link to chromosome band 12p13]
Location_base_pair Starts at 2220537 and ends at 2223481 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CACNA1C-AS4   40116
Cards
Entrez_Gene (NCBI)CACNA1C-AS4  100874234  CACNA1C antisense RNA 4
Aliases
GeneCards (Weizmann)CACNA1C-AS4
Ensembl hg19 (Hinxton)ENSG00000256025 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000256025 [Gene_View]  ENSG00000256025 [Sequence]  chr12:2220537-2223481 [Contig_View]  CACNA1C-AS4 [Vega]
ICGC DataPortalENSG00000256025
TCGA cBioPortalCACNA1C-AS4
AceView (NCBI)CACNA1C-AS4
Genatlas (Paris)CACNA1C-AS4
WikiGenes100874234
SOURCE (Princeton)CACNA1C-AS4
Genetics Home Reference (NIH)CACNA1C-AS4
Genomic and cartography
GoldenPath hg38 (UCSC)CACNA1C-AS4  -     chr12:2220537-2223481 -  12p13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CACNA1C-AS4  -     12p13.33   [Description]    (hg19-Feb_2009)
GoldenPathCACNA1C-AS4 - 12p13.33 [CytoView hg19]  CACNA1C-AS4 - 12p13.33 [CytoView hg38]
ImmunoBaseENSG00000256025
Mapping of homologs : NCBICACNA1C-AS4 [Mapview hg19]  CACNA1C-AS4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BI830379 DB094045
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CACNA1C-AS4
Cluster EST : UnigeneHs.372570 [ NCBI ]
CGAP (NCI)Hs.372570
Alternative Splicing GalleryENSG00000256025
Gene ExpressionCACNA1C-AS4 [ NCBI-GEO ]   CACNA1C-AS4 [ EBI - ARRAY_EXPRESS ]   CACNA1C-AS4 [ SEEK ]   CACNA1C-AS4 [ MEM ]
Gene Expression Viewer (FireBrowse)CACNA1C-AS4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100874234
GTEX Portal (Tissue expression)CACNA1C-AS4
Human Protein AtlasENSG00000256025-CACNA1C-AS4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CACNA1C-AS4
DMDM Disease mutations100874234
Blocks (Seattle)CACNA1C-AS4
Human Protein Atlas [tissue]ENSG00000256025-CACNA1C-AS4 [tissue]
Protein Interaction databases
FunCoupENSG00000256025
BioGRIDCACNA1C-AS4
STRING (EMBL)CACNA1C-AS4
ZODIACCACNA1C-AS4
Ontologies - Pathways
Huge Navigator CACNA1C-AS4 [HugePedia]
snp3D : Map Gene to Disease100874234
BioCentury BCIQCACNA1C-AS4
ClinGenCACNA1C-AS4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100874234
Clinical trialCACNA1C-AS4
Miscellaneous
canSAR (ICR)CACNA1C-AS4 (select the gene name)
DataMed IndexCACNA1C-AS4
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCACNA1C-AS4
EVEXCACNA1C-AS4
GoPubMedCACNA1C-AS4
iHOPCACNA1C-AS4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 15:22:32 CEST 2019
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