Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CACNA1C-IT3 (CACNA1C intronic transcript 3)

Identity

Alias_namesCACNA1C intronic transcript 3 (non-protein coding)
Other alias-
HGNC (Hugo) CACNA1C-IT3
LocusID (NCBI) 100874370
Atlas_Id 61361
Location 12p13.33  [Link to chromosome band 12p13]
Location_base_pair Starts at 2269776 and ends at 2288745 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CACNA1C-IT3   41314
Cards
Entrez_Gene (NCBI)CACNA1C-IT3  100874370  CACNA1C intronic transcript 3
Aliases
GeneCards (Weizmann)CACNA1C-IT3
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr12:2269776-2288745 [Contig_View]  CACNA1C-IT3 [Vega]
TCGA cBioPortalCACNA1C-IT3
AceView (NCBI)CACNA1C-IT3
Genatlas (Paris)CACNA1C-IT3
WikiGenes100874370
SOURCE (Princeton)CACNA1C-IT3
Genetics Home Reference (NIH)CACNA1C-IT3
Genomic and cartography
GoldenPath hg38 (UCSC)CACNA1C-IT3  -     chr12:2269776-2288745 +  12p13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CACNA1C-IT3  -     12p13.33   [Description]    (hg19-Feb_2009)
EnsemblCACNA1C-IT3 - 12p13.33 [CytoView hg19]  CACNA1C-IT3 - 12p13.33 [CytoView hg38]
Mapping of homologs : NCBICACNA1C-IT3 [Mapview hg19]  CACNA1C-IT3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA421533
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CACNA1C-IT3
Cluster EST : UnigeneHs.653548 [ NCBI ]
CGAP (NCI)Hs.653548
Gene ExpressionCACNA1C-IT3 [ NCBI-GEO ]   CACNA1C-IT3 [ EBI - ARRAY_EXPRESS ]   CACNA1C-IT3 [ SEEK ]   CACNA1C-IT3 [ MEM ]
Gene Expression Viewer (FireBrowse)CACNA1C-IT3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100874370
GTEX Portal (Tissue expression)CACNA1C-IT3
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CACNA1C-IT3
DMDM Disease mutations100874370
Blocks (Seattle)CACNA1C-IT3
Protein Interaction databases
BioGRIDCACNA1C-IT3
STRING (EMBL)CACNA1C-IT3
ZODIACCACNA1C-IT3
Ontologies - Pathways
Huge Navigator CACNA1C-IT3 [HugePedia]
snp3D : Map Gene to Disease100874370
BioCentury BCIQCACNA1C-IT3
ClinGenCACNA1C-IT3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100874370
Clinical trialCACNA1C-IT3
Miscellaneous
canSAR (ICR)CACNA1C-IT3 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineCACNA1C-IT3
EVEXCACNA1C-IT3
GoPubMedCACNA1C-IT3
iHOPCACNA1C-IT3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 11:04:09 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.