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CACNA1C (calcium voltage-gated channel subunit alpha1 C)

Identity

Alias (NCBI)CACH2
CACN2
CACNL1A1
CCHL1A1
CaV1.2
LQT8
TS
TS. LQT8
HGNC (Hugo) CACNA1C
HGNC Alias symbCav1.2
CACH2
CACN2
TS
LQT8
HGNC Previous nameCCHL1A1
 CACNL1A1
HGNC Previous namecalcium channel, voltage-dependent, L type, alpha 1C subunit
LocusID (NCBI) 775
Atlas_Id 43691
Location 12p13.33  [Link to chromosome band 12p13]
Location_base_pair Starts at 2053285 and ends at 2697949 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CACNA1C (12p13.33) / CABIN1 (22q11.23)CACNA1C (12p13.33) / CACNA1C (12p13.33)CACNA1C (12p13.33) / DDX55 (12q24.31)
CACNA1C (12p13.33) / LOC284889 ()CACNA1C (12p13.33) / MNAT1 (14q23.1)CACNA1C (12p13.33) / RHOB (2p24.1)
CACNA1C (12p13.33) / WNT5B (12p13.33)CACNA1C (12p13.33) / WWP2 (16q22.1)MAP1B (5q13.2) / CACNA1C (12p13.33)
RMI2 (16p13.13) / CACNA1C (12p13.33)SEMA4B (15q26.1) / CACNA1C (12p13.33)SOX13 (1q32.1) / CACNA1C (12p13.33)
SYNE1 (6q25.1) / CACNA1C (12p13.33)TBL1XR1 (3q26.32) / CACNA1C (12p13.33)TSPAN9 (12p13.33) / CACNA1C (12p13.33)
CACNA1C 12p13.33 / DDX55 12q24.31CACNA1C 12p13.33 / WNT5B 12p13.33CACNA1C 12p13.33 / WWP2 16q22.1
SYNE1 6q25.1 / CACNA1C 12p13.33TBL1XR1 3q26.32 / CACNA1C 12p13.33TSPAN9 12p13.33 / CACNA1C 12p13.33

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)CACNA1C   1390
LRG (Locus Reference Genomic)LRG_334
Cards
Entrez_Gene (NCBI)CACNA1C    calcium voltage-gated channel subunit alpha1 C
AliasesCACH2; CACN2; CACNL1A1; CCHL1A1; 
CaV1.2; LQT8; TS; TS.
GeneCards (Weizmann)CACNA1C
Ensembl hg19 (Hinxton)ENSG00000151067 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000151067 [Gene_View]  ENSG00000151067 [Sequence]  chr12:2053285-2697949 [Contig_View]  CACNA1C [Vega]
ICGC DataPortalENSG00000151067
TCGA cBioPortalCACNA1C
AceView (NCBI)CACNA1C
Genatlas (Paris)CACNA1C
SOURCE (Princeton)CACNA1C
Genetics Home Reference (NIH)CACNA1C
Genomic and cartography
GoldenPath hg38 (UCSC)CACNA1C  -     chr12:2053285-2697949 +  12p13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CACNA1C  -     12p13.33   [Description]    (hg19-Feb_2009)
GoldenPathCACNA1C - 12p13.33 [CytoView hg19]  CACNA1C - 12p13.33 [CytoView hg38]
ImmunoBaseENSG00000151067
Genome Data Viewer NCBICACNA1C [Mapview hg19]  
OMIM114205   601005   611875   618447   
Gene and transcription
Genbank (Entrez)AB209016 AF070589 AF465484 AJ224873 AJ536834
RefSeq transcript (Entrez)NM_000719 NM_001129827 NM_001129829 NM_001129830 NM_001129831 NM_001129832 NM_001129833 NM_001129834 NM_001129835 NM_001129836 NM_001129837 NM_001129838 NM_001129839 NM_001129840 NM_001129841 NM_001129842 NM_001129843 NM_001129844 NM_001129846 NM_001167623 NM_001167624 NM_001167625 NM_199460
Consensus coding sequences : CCDS (NCBI)CACNA1C
Gene ExpressionCACNA1C [ NCBI-GEO ]   CACNA1C [ EBI - ARRAY_EXPRESS ]   CACNA1C [ SEEK ]   CACNA1C [ MEM ]
Gene Expression Viewer (FireBrowse)CACNA1C [ Firebrowse - Broad ]
GenevisibleExpression of CACNA1C in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)775
GTEX Portal (Tissue expression)CACNA1C
Human Protein AtlasENSG00000151067-CACNA1C [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CACNA1C
Human Protein Atlas [tissue]ENSG00000151067-CACNA1C [tissue]
HPRD00246
Protein Interaction databases
BioGRIDCACNA1C
STRING (EMBL)CACNA1C
ZODIACCACNA1C
Ontologies - Pathways
Litterature
PubMed338 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCACNA1C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:01:57 CEST 2021

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