Atlas of Genetics and Cytogenetics in Oncology and Haematology

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CACNB2 (calcium voltage-gated channel auxiliary subunit beta 2)

Identity

Alias (NCBI)CAB2
CACNLB2
CAVB2
MYSB
HGNC (Hugo) CACNB2
HGNC Previous nameMYSB
 CACNLB2
HGNC Previous namecalcium channel, voltage-dependent, beta 2 subunit
LocusID (NCBI) 783
Atlas_Id 61369
Location 10p12.33  [Link to chromosome band 10p12]
Location_base_pair Starts at 18140424 and ends at 18543557 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CACNB2 (10p12.33) / NUP98 (11p15.4)CACNB2 (10p12.33) / PCGF2 (17q12)CACNB2 (10p12.33) / SPARCL1 (4q22.1)
FAM188A (10p13) / CACNB2 (10p12.33)KLK3 (19q13.33) / CACNB2 (10p12.33)MAP9 (4q32.1) / CACNB2 (10p12.33)
PRPF18 (10p13) / CACNB2 (10p12.33)PTPRK (6q22.33) / CACNB2 (10p12.33)PRPF18 CACNB2
FAM188A CACNB2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CACNB2   1402
LRG (Locus Reference Genomic)LRG_381
Cards
Entrez_Gene (NCBI)CACNB2    calcium voltage-gated channel auxiliary subunit beta 2
AliasesCAB2; CACNLB2; CAVB2; MYSB
GeneCards (Weizmann)CACNB2
Ensembl hg19 (Hinxton)ENSG00000165995 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165995 [Gene_View]  ENSG00000165995 [Sequence]  chr10:18140424-18543557 [Contig_View]  CACNB2 [Vega]
ICGC DataPortalENSG00000165995
TCGA cBioPortalCACNB2
AceView (NCBI)CACNB2
Genatlas (Paris)CACNB2
SOURCE (Princeton)CACNB2
Genetics Home Reference (NIH)CACNB2
Genomic and cartography
GoldenPath hg38 (UCSC)CACNB2  -     chr10:18140424-18543557 +  10p12.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CACNB2  -     10p12.33   [Description]    (hg19-Feb_2009)
GoldenPathCACNB2 - 10p12.33 [CytoView hg19]  CACNB2 - 10p12.33 [CytoView hg38]
ImmunoBaseENSG00000165995
Genome Data Viewer NCBICACNB2 [Mapview hg19]  
OMIM600003   611876   
Gene and transcription
Genbank (Entrez)AB208917 AF137376 AF137377 AF285239 AF423189
RefSeq transcript (Entrez)NM_000724 NM_001167945 NM_001330060 NM_201570 NM_201571 NM_201572 NM_201590 NM_201593 NM_201596 NM_201597
Consensus coding sequences : CCDS (NCBI)CACNB2
Gene ExpressionCACNB2 [ NCBI-GEO ]   CACNB2 [ EBI - ARRAY_EXPRESS ]   CACNB2 [ SEEK ]   CACNB2 [ MEM ]
Gene Expression Viewer (FireBrowse)CACNB2 [ Firebrowse - Broad ]
GenevisibleExpression of CACNB2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)783
GTEX Portal (Tissue expression)CACNB2
Human Protein AtlasENSG00000165995-CACNB2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CACNB2
Human Protein Atlas [tissue]ENSG00000165995-CACNB2 [tissue]
HPRD02473
Protein Interaction databases
BioGRIDCACNB2
STRING (EMBL)CACNB2
ZODIACCACNB2
Ontologies - Pathways
Litterature
PubMed80 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCACNB2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:44:40 CEST 2021
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