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CACNG1 (calcium voltage-gated channel auxiliary subunit gamma 1)

Identity

Alias_namesCACNLG
calcium channel, voltage-dependent, gamma subunit 1
Other alias
HGNC (Hugo) CACNG1
LocusID (NCBI) 786
Atlas_Id 61372
Location 17q24.2  [Link to chromosome band 17q24]
Location_base_pair Starts at 67044536 and ends at 67056795 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PPP1R37 (19q13.32) / CACNG1 (17q24.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CACNG1   1405
Cards
Entrez_Gene (NCBI)CACNG1  786  calcium voltage-gated channel auxiliary subunit gamma 1
AliasesCACNLG
GeneCards (Weizmann)CACNG1
Ensembl hg19 (Hinxton)ENSG00000108878 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000108878 [Gene_View]  chr17:67044536-67056795 [Contig_View]  CACNG1 [Vega]
ICGC DataPortalENSG00000108878
TCGA cBioPortalCACNG1
AceView (NCBI)CACNG1
Genatlas (Paris)CACNG1
WikiGenes786
SOURCE (Princeton)CACNG1
Genetics Home Reference (NIH)CACNG1
Genomic and cartography
GoldenPath hg38 (UCSC)CACNG1  -     chr17:67044536-67056795 +  17q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CACNG1  -     17q24.2   [Description]    (hg19-Feb_2009)
EnsemblCACNG1 - 17q24.2 [CytoView hg19]  CACNG1 - 17q24.2 [CytoView hg38]
Mapping of homologs : NCBICACNG1 [Mapview hg19]  CACNG1 [Mapview hg38]
OMIM114209   
Gene and transcription
Genbank (Entrez)AF086300 AK313852 BC069493 BC113486 BC113492
RefSeq transcript (Entrez)NM_000727
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CACNG1
Cluster EST : UnigeneHs.147989 [ NCBI ]
CGAP (NCI)Hs.147989
Alternative Splicing GalleryENSG00000108878
Gene ExpressionCACNG1 [ NCBI-GEO ]   CACNG1 [ EBI - ARRAY_EXPRESS ]   CACNG1 [ SEEK ]   CACNG1 [ MEM ]
Gene Expression Viewer (FireBrowse)CACNG1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)786
GTEX Portal (Tissue expression)CACNG1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ06432   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ06432  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ06432
Splice isoforms : SwissVarQ06432
PhosPhoSitePlusQ06432
Domains : Interpro (EBI)PMP22/EMP/MP20/Claudin    VDCC_g1su    VDCC_gsu   
Domain families : Pfam (Sanger)Claudin_2 (PF13903)   
Domain families : Pfam (NCBI)pfam13903   
Conserved Domain (NCBI)CACNG1
DMDM Disease mutations786
Blocks (Seattle)CACNG1
SuperfamilyQ06432
Human Protein AtlasENSG00000108878
Peptide AtlasQ06432
HPRD00249
IPIIPI00030935   
Protein Interaction databases
DIP (DOE-UCLA)Q06432
IntAct (EBI)Q06432
FunCoupENSG00000108878
BioGRIDCACNG1
STRING (EMBL)CACNG1
ZODIACCACNG1
Ontologies - Pathways
QuickGOQ06432
Ontology : AmiGOvoltage-gated calcium channel activity  protein binding  plasma membrane  voltage-gated calcium channel complex  transport  muscle contraction  regulation of ion transmembrane transport  cardiac conduction  sarcoplasmic reticulum calcium ion transport  calcium ion transmembrane transport  
Ontology : EGO-EBIvoltage-gated calcium channel activity  protein binding  plasma membrane  voltage-gated calcium channel complex  transport  muscle contraction  regulation of ion transmembrane transport  cardiac conduction  sarcoplasmic reticulum calcium ion transport  calcium ion transmembrane transport  
Pathways : KEGGMAPK signaling pathway    Cardiac muscle contraction    Adrenergic signaling in cardiomyocytes    Hypertrophic cardiomyopathy (HCM)    Arrhythmogenic right ventricular cardiomyopathy (ARVC)    Dilated cardiomyopathy   
NDEx NetworkCACNG1
Atlas of Cancer Signalling NetworkCACNG1
Wikipedia pathwaysCACNG1
Orthology - Evolution
OrthoDB786
GeneTree (enSembl)ENSG00000108878
Phylogenetic Trees/Animal Genes : TreeFamCACNG1
HOVERGENQ06432
HOGENOMQ06432
Homologs : HomoloGeneCACNG1
Homology/Alignments : Family Browser (UCSC)CACNG1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCACNG1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CACNG1
dbVarCACNG1
ClinVarCACNG1
1000_GenomesCACNG1 
Exome Variant ServerCACNG1
ExAC (Exome Aggregation Consortium)CACNG1 (select the gene name)
Genetic variants : HAPMAP786
Genomic Variants (DGV)CACNG1 [DGVbeta]
DECIPHERCACNG1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCACNG1 
Mutations
ICGC Data PortalCACNG1 
TCGA Data PortalCACNG1 
Broad Tumor PortalCACNG1
OASIS PortalCACNG1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCACNG1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCACNG1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CACNG1
DgiDB (Drug Gene Interaction Database)CACNG1
DoCM (Curated mutations)CACNG1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CACNG1 (select a term)
intoGenCACNG1
Cancer3DCACNG1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM114209   
Orphanet
MedgenCACNG1
Genetic Testing Registry CACNG1
NextProtQ06432 [Medical]
TSGene786
GENETestsCACNG1
Target ValidationCACNG1
Huge Navigator CACNG1 [HugePedia]
snp3D : Map Gene to Disease786
BioCentury BCIQCACNG1
ClinGenCACNG1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD786
Chemical/Pharm GKB GenePA26015
Clinical trialCACNG1
Miscellaneous
canSAR (ICR)CACNG1 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCACNG1
EVEXCACNG1
GoPubMedCACNG1
iHOPCACNG1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:03:46 CEST 2017

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