Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CACNG3 (calcium voltage-gated channel auxiliary subunit gamma 3)

Identity

Alias_namescalcium channel, voltage-dependent, gamma subunit 3
Other alias-
HGNC (Hugo) CACNG3
LocusID (NCBI) 10368
Atlas_Id 61374
Location 16p12.1  [Link to chromosome band 16p12]
Location_base_pair Starts at 24255553 and ends at 24362416 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CACNG3   1407
Cards
Entrez_Gene (NCBI)CACNG3  10368  calcium voltage-gated channel auxiliary subunit gamma 3
Aliases
GeneCards (Weizmann)CACNG3
Ensembl hg19 (Hinxton)ENSG00000006116 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000006116 [Gene_View]  chr16:24255553-24362416 [Contig_View]  CACNG3 [Vega]
ICGC DataPortalENSG00000006116
TCGA cBioPortalCACNG3
AceView (NCBI)CACNG3
Genatlas (Paris)CACNG3
WikiGenes10368
SOURCE (Princeton)CACNG3
Genetics Home Reference (NIH)CACNG3
Genomic and cartography
GoldenPath hg38 (UCSC)CACNG3  -     chr16:24255553-24362416 +  16p12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CACNG3  -     16p12.1   [Description]    (hg19-Feb_2009)
EnsemblCACNG3 - 16p12.1 [CytoView hg19]  CACNG3 - 16p12.1 [CytoView hg38]
Mapping of homologs : NCBICACNG3 [Mapview hg19]  CACNG3 [Mapview hg38]
OMIM606403   
Gene and transcription
Genbank (Entrez)AF100346 AF114832 AF134640 AK055453 AK095553
RefSeq transcript (Entrez)NM_006539
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CACNG3
Cluster EST : UnigeneHs.7235 [ NCBI ]
CGAP (NCI)Hs.7235
Alternative Splicing GalleryENSG00000006116
Gene ExpressionCACNG3 [ NCBI-GEO ]   CACNG3 [ EBI - ARRAY_EXPRESS ]   CACNG3 [ SEEK ]   CACNG3 [ MEM ]
Gene Expression Viewer (FireBrowse)CACNG3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10368
GTEX Portal (Tissue expression)CACNG3
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60359   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60359  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60359
Splice isoforms : SwissVarO60359
PhosPhoSitePlusO60359
Domains : Interpro (EBI)PMP22/EMP/MP20/Claudin    VDCC_gsu   
Domain families : Pfam (Sanger)PMP22_Claudin (PF00822)   
Domain families : Pfam (NCBI)pfam00822   
Conserved Domain (NCBI)CACNG3
DMDM Disease mutations10368
Blocks (Seattle)CACNG3
SuperfamilyO60359
Human Protein AtlasENSG00000006116
Peptide AtlasO60359
HPRD05910
IPIIPI00029074   
Protein Interaction databases
DIP (DOE-UCLA)O60359
IntAct (EBI)O60359
FunCoupENSG00000006116
BioGRIDCACNG3
STRING (EMBL)CACNG3
ZODIACCACNG3
Ontologies - Pathways
QuickGOO60359
Ontology : AmiGOvoltage-gated calcium channel activity  voltage-gated calcium channel activity  plasma membrane  voltage-gated calcium channel complex  calcium ion transport  channel regulator activity  transmission of nerve impulse  endocytic vesicle membrane  AMPA glutamate receptor complex  AMPA glutamate receptor complex  cardiac conduction  calcium ion transmembrane transport  regulation of AMPA receptor activity  regulation of AMPA receptor activity  
Ontology : EGO-EBIvoltage-gated calcium channel activity  voltage-gated calcium channel activity  plasma membrane  voltage-gated calcium channel complex  calcium ion transport  channel regulator activity  transmission of nerve impulse  endocytic vesicle membrane  AMPA glutamate receptor complex  AMPA glutamate receptor complex  cardiac conduction  calcium ion transmembrane transport  regulation of AMPA receptor activity  regulation of AMPA receptor activity  
Pathways : KEGGMAPK signaling pathway    Cardiac muscle contraction    Adrenergic signaling in cardiomyocytes    Hypertrophic cardiomyopathy (HCM)    Arrhythmogenic right ventricular cardiomyopathy (ARVC)    Dilated cardiomyopathy   
NDEx NetworkCACNG3
Atlas of Cancer Signalling NetworkCACNG3
Wikipedia pathwaysCACNG3
Orthology - Evolution
OrthoDB10368
GeneTree (enSembl)ENSG00000006116
Phylogenetic Trees/Animal Genes : TreeFamCACNG3
HOVERGENO60359
HOGENOMO60359
Homologs : HomoloGeneCACNG3
Homology/Alignments : Family Browser (UCSC)CACNG3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCACNG3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CACNG3
dbVarCACNG3
ClinVarCACNG3
1000_GenomesCACNG3 
Exome Variant ServerCACNG3
ExAC (Exome Aggregation Consortium)CACNG3 (select the gene name)
Genetic variants : HAPMAP10368
Genomic Variants (DGV)CACNG3 [DGVbeta]
DECIPHERCACNG3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCACNG3 
Mutations
ICGC Data PortalCACNG3 
TCGA Data PortalCACNG3 
Broad Tumor PortalCACNG3
OASIS PortalCACNG3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCACNG3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCACNG3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CACNG3
DgiDB (Drug Gene Interaction Database)CACNG3
DoCM (Curated mutations)CACNG3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CACNG3 (select a term)
intoGenCACNG3
Cancer3DCACNG3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606403   
Orphanet
MedgenCACNG3
Genetic Testing Registry CACNG3
NextProtO60359 [Medical]
TSGene10368
GENETestsCACNG3
Target ValidationCACNG3
Huge Navigator CACNG3 [HugePedia]
snp3D : Map Gene to Disease10368
BioCentury BCIQCACNG3
ClinGenCACNG3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10368
Chemical/Pharm GKB GenePA26017
Clinical trialCACNG3
Miscellaneous
canSAR (ICR)CACNG3 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCACNG3
EVEXCACNG3
GoPubMedCACNG3
iHOPCACNG3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:03:46 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.