Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CACNG4 (calcium voltage-gated channel auxiliary subunit gamma 4)

Identity

Alias_namescalcium channel, voltage-dependent, gamma subunit 4
Alias_symbol (synonym)MGC11138
MGC24983
Other alias-
HGNC (Hugo) CACNG4
LocusID (NCBI) 27092
Atlas_Id 61375
Location 17q24.2  [Link to chromosome band 17q24]
Location_base_pair Starts at 66964864 and ends at 67033402 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CACNG4 (17q24.2) / C17orf51 (17p11.2)CACNG4 (17q24.2) / VMP1 (17q23.1)HELZ (17q24.2) / CACNG4 (17q24.2)
IQCB1 (3q13.33) / CACNG4 (17q24.2)CACNG4 C17orf51CACNG4 VMP1
IQCB1 CACNG4HELZ CACNG4

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CACNG4   1408
Cards
Entrez_Gene (NCBI)CACNG4  27092  calcium voltage-gated channel auxiliary subunit gamma 4
Aliases
GeneCards (Weizmann)CACNG4
Ensembl hg19 (Hinxton)ENSG00000075461 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000075461 [Gene_View]  chr17:66964864-67033402 [Contig_View]  CACNG4 [Vega]
ICGC DataPortalENSG00000075461
TCGA cBioPortalCACNG4
AceView (NCBI)CACNG4
Genatlas (Paris)CACNG4
WikiGenes27092
SOURCE (Princeton)CACNG4
Genetics Home Reference (NIH)CACNG4
Genomic and cartography
GoldenPath hg38 (UCSC)CACNG4  -     chr17:66964864-67033402 +  17q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CACNG4  -     17q24.2   [Description]    (hg19-Feb_2009)
EnsemblCACNG4 - 17q24.2 [CytoView hg19]  CACNG4 - 17q24.2 [CytoView hg38]
Mapping of homologs : NCBICACNG4 [Mapview hg19]  CACNG4 [Mapview hg38]
OMIM606404   
Gene and transcription
Genbank (Entrez)AF162692 AK055232 AK315149 AL526464 AL713655
RefSeq transcript (Entrez)NM_014405
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CACNG4
Cluster EST : UnigeneHs.514423 [ NCBI ]
CGAP (NCI)Hs.514423
Alternative Splicing GalleryENSG00000075461
Gene ExpressionCACNG4 [ NCBI-GEO ]   CACNG4 [ EBI - ARRAY_EXPRESS ]   CACNG4 [ SEEK ]   CACNG4 [ MEM ]
Gene Expression Viewer (FireBrowse)CACNG4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27092
GTEX Portal (Tissue expression)CACNG4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UBN1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UBN1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UBN1
Splice isoforms : SwissVarQ9UBN1
PhosPhoSitePlusQ9UBN1
Domains : Interpro (EBI)PMP22/EMP/MP20/Claudin    VDCC_g4su    VDCC_gsu   
Domain families : Pfam (Sanger)PMP22_Claudin (PF00822)   
Domain families : Pfam (NCBI)pfam00822   
Conserved Domain (NCBI)CACNG4
DMDM Disease mutations27092
Blocks (Seattle)CACNG4
SuperfamilyQ9UBN1
Human Protein AtlasENSG00000075461
Peptide AtlasQ9UBN1
HPRD05911
IPIIPI00002685   IPI00386089   
Protein Interaction databases
DIP (DOE-UCLA)Q9UBN1
IntAct (EBI)Q9UBN1
FunCoupENSG00000075461
BioGRIDCACNG4
STRING (EMBL)CACNG4
ZODIACCACNG4
Ontologies - Pathways
QuickGOQ9UBN1
Ontology : AmiGOvoltage-gated calcium channel activity  calcium channel activity  plasma membrane  integral component of plasma membrane  voltage-gated calcium channel complex  transport  channel regulator activity  transmission of nerve impulse  endocytic vesicle membrane  AMPA glutamate receptor complex  AMPA glutamate receptor complex  membrane depolarization  cardiac conduction  calcium ion transmembrane transport  regulation of AMPA receptor activity  
Ontology : EGO-EBIvoltage-gated calcium channel activity  calcium channel activity  plasma membrane  integral component of plasma membrane  voltage-gated calcium channel complex  transport  channel regulator activity  transmission of nerve impulse  endocytic vesicle membrane  AMPA glutamate receptor complex  AMPA glutamate receptor complex  membrane depolarization  cardiac conduction  calcium ion transmembrane transport  regulation of AMPA receptor activity  
Pathways : KEGGMAPK signaling pathway    Cardiac muscle contraction    Adrenergic signaling in cardiomyocytes    Hypertrophic cardiomyopathy (HCM)    Arrhythmogenic right ventricular cardiomyopathy (ARVC)    Dilated cardiomyopathy   
NDEx NetworkCACNG4
Atlas of Cancer Signalling NetworkCACNG4
Wikipedia pathwaysCACNG4
Orthology - Evolution
OrthoDB27092
GeneTree (enSembl)ENSG00000075461
Phylogenetic Trees/Animal Genes : TreeFamCACNG4
HOVERGENQ9UBN1
HOGENOMQ9UBN1
Homologs : HomoloGeneCACNG4
Homology/Alignments : Family Browser (UCSC)CACNG4
Gene fusions - Rearrangements
Fusion: TCGACACNG4 C17orf51
Fusion: TCGACACNG4 VMP1
Fusion: TCGAIQCB1 CACNG4
Fusion: TCGAHELZ CACNG4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCACNG4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CACNG4
dbVarCACNG4
ClinVarCACNG4
1000_GenomesCACNG4 
Exome Variant ServerCACNG4
ExAC (Exome Aggregation Consortium)CACNG4 (select the gene name)
Genetic variants : HAPMAP27092
Genomic Variants (DGV)CACNG4 [DGVbeta]
DECIPHERCACNG4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCACNG4 
Mutations
ICGC Data PortalCACNG4 
TCGA Data PortalCACNG4 
Broad Tumor PortalCACNG4
OASIS PortalCACNG4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCACNG4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCACNG4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CACNG4
DgiDB (Drug Gene Interaction Database)CACNG4
DoCM (Curated mutations)CACNG4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CACNG4 (select a term)
intoGenCACNG4
Cancer3DCACNG4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606404   
Orphanet
MedgenCACNG4
Genetic Testing Registry CACNG4
NextProtQ9UBN1 [Medical]
TSGene27092
GENETestsCACNG4
Target ValidationCACNG4
Huge Navigator CACNG4 [HugePedia]
snp3D : Map Gene to Disease27092
BioCentury BCIQCACNG4
ClinGenCACNG4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD27092
Chemical/Pharm GKB GenePA26018
Clinical trialCACNG4
Miscellaneous
canSAR (ICR)CACNG4 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCACNG4
EVEXCACNG4
GoPubMedCACNG4
iHOPCACNG4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:03:46 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.