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CACNG5 (calcium voltage-gated channel auxiliary subunit gamma 5)

Identity

Alias_namescalcium channel, voltage-dependent, gamma subunit 5
Other alias-
HGNC (Hugo) CACNG5
LocusID (NCBI) 27091
Atlas_Id 61376
Location 17q24.2  [Link to chromosome band 17q24]
Location_base_pair Starts at 66877273 and ends at 66885278 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CACNG5   1409
Cards
Entrez_Gene (NCBI)CACNG5  27091  calcium voltage-gated channel auxiliary subunit gamma 5
Aliases
GeneCards (Weizmann)CACNG5
Ensembl hg19 (Hinxton)ENSG00000075429 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000075429 [Gene_View]  chr17:66877273-66885278 [Contig_View]  CACNG5 [Vega]
ICGC DataPortalENSG00000075429
TCGA cBioPortalCACNG5
AceView (NCBI)CACNG5
Genatlas (Paris)CACNG5
WikiGenes27091
SOURCE (Princeton)CACNG5
Genetics Home Reference (NIH)CACNG5
Genomic and cartography
GoldenPath hg38 (UCSC)CACNG5  -     chr17:66877273-66885278 +  17q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CACNG5  -     17q24.2   [Description]    (hg19-Feb_2009)
EnsemblCACNG5 - 17q24.2 [CytoView hg19]  CACNG5 - 17q24.2 [CytoView hg38]
Mapping of homologs : NCBICACNG5 [Mapview hg19]  CACNG5 [Mapview hg38]
OMIM606405   
Gene and transcription
Genbank (Entrez)AF148220 AF361351 AF458898 AK290171 BC101607
RefSeq transcript (Entrez)NM_014404 NM_145811
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CACNG5
Cluster EST : UnigeneHs.278907 [ NCBI ]
CGAP (NCI)Hs.278907
Alternative Splicing GalleryENSG00000075429
Gene ExpressionCACNG5 [ NCBI-GEO ]   CACNG5 [ EBI - ARRAY_EXPRESS ]   CACNG5 [ SEEK ]   CACNG5 [ MEM ]
Gene Expression Viewer (FireBrowse)CACNG5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27091
GTEX Portal (Tissue expression)CACNG5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UF02   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UF02  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UF02
Splice isoforms : SwissVarQ9UF02
PhosPhoSitePlusQ9UF02
Domains : Interpro (EBI)PMP22/EMP/MP20/Claudin    VDCC_g5su    VDCC_gsu   
Domain families : Pfam (Sanger)PMP22_Claudin (PF00822)   
Domain families : Pfam (NCBI)pfam00822   
Conserved Domain (NCBI)CACNG5
DMDM Disease mutations27091
Blocks (Seattle)CACNG5
SuperfamilyQ9UF02
Human Protein AtlasENSG00000075429
Peptide AtlasQ9UF02
HPRD05912
IPIIPI00004272   IPI00155892   
Protein Interaction databases
DIP (DOE-UCLA)Q9UF02
IntAct (EBI)Q9UF02
FunCoupENSG00000075429
BioGRIDCACNG5
STRING (EMBL)CACNG5
ZODIACCACNG5
Ontologies - Pathways
QuickGOQ9UF02
Ontology : AmiGOvoltage-gated calcium channel activity  plasma membrane  transport  postsynaptic density  ion transmembrane transporter activity  channel regulator activity  transmission of nerve impulse  cell junction  AMPA glutamate receptor complex  AMPA glutamate receptor complex  postsynaptic membrane  cardiac conduction  calcium ion transmembrane transport  regulation of AMPA receptor activity  regulation of AMPA receptor activity  
Ontology : EGO-EBIvoltage-gated calcium channel activity  plasma membrane  transport  postsynaptic density  ion transmembrane transporter activity  channel regulator activity  transmission of nerve impulse  cell junction  AMPA glutamate receptor complex  AMPA glutamate receptor complex  postsynaptic membrane  cardiac conduction  calcium ion transmembrane transport  regulation of AMPA receptor activity  regulation of AMPA receptor activity  
Pathways : KEGGMAPK signaling pathway    Cardiac muscle contraction    Adrenergic signaling in cardiomyocytes    Hypertrophic cardiomyopathy (HCM)    Arrhythmogenic right ventricular cardiomyopathy (ARVC)    Dilated cardiomyopathy   
NDEx NetworkCACNG5
Atlas of Cancer Signalling NetworkCACNG5
Wikipedia pathwaysCACNG5
Orthology - Evolution
OrthoDB27091
GeneTree (enSembl)ENSG00000075429
Phylogenetic Trees/Animal Genes : TreeFamCACNG5
HOVERGENQ9UF02
HOGENOMQ9UF02
Homologs : HomoloGeneCACNG5
Homology/Alignments : Family Browser (UCSC)CACNG5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCACNG5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CACNG5
dbVarCACNG5
ClinVarCACNG5
1000_GenomesCACNG5 
Exome Variant ServerCACNG5
ExAC (Exome Aggregation Consortium)CACNG5 (select the gene name)
Genetic variants : HAPMAP27091
Genomic Variants (DGV)CACNG5 [DGVbeta]
DECIPHERCACNG5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCACNG5 
Mutations
ICGC Data PortalCACNG5 
TCGA Data PortalCACNG5 
Broad Tumor PortalCACNG5
OASIS PortalCACNG5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCACNG5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCACNG5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CACNG5
DgiDB (Drug Gene Interaction Database)CACNG5
DoCM (Curated mutations)CACNG5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CACNG5 (select a term)
intoGenCACNG5
Cancer3DCACNG5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606405   
Orphanet
MedgenCACNG5
Genetic Testing Registry CACNG5
NextProtQ9UF02 [Medical]
TSGene27091
GENETestsCACNG5
Target ValidationCACNG5
Huge Navigator CACNG5 [HugePedia]
snp3D : Map Gene to Disease27091
BioCentury BCIQCACNG5
ClinGenCACNG5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD27091
Chemical/Pharm GKB GenePA26019
Clinical trialCACNG5
Miscellaneous
canSAR (ICR)CACNG5 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCACNG5
EVEXCACNG5
GoPubMedCACNG5
iHOPCACNG5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:03:46 CEST 2017

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