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CACNG6 (calcium voltage-gated channel auxiliary subunit gamma 6)

Identity

Alias_namescalcium channel
Other alias-
HGNC (Hugo) CACNG6
LocusID (NCBI) 59285
Atlas_Id 54188
Location 19q13.42  [Link to chromosome band 19q13]
Location_base_pair Starts at 53992288 and ends at 54012666 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CACNG6 (19q13.42) / ZNF320 (19q13.41)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CACNG6   13625
Cards
Entrez_Gene (NCBI)CACNG6  59285  calcium voltage-gated channel auxiliary subunit gamma 6
Aliases
GeneCards (Weizmann)CACNG6
Ensembl hg19 (Hinxton)ENSG00000130433 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000130433 [Gene_View]  chr19:53992288-54012666 [Contig_View]  CACNG6 [Vega]
ICGC DataPortalENSG00000130433
TCGA cBioPortalCACNG6
AceView (NCBI)CACNG6
Genatlas (Paris)CACNG6
WikiGenes59285
SOURCE (Princeton)CACNG6
Genetics Home Reference (NIH)CACNG6
Genomic and cartography
GoldenPath hg38 (UCSC)CACNG6  -     chr19:53992288-54012666 +  19q13.42   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CACNG6  -     19q13.42   [Description]    (hg19-Feb_2009)
EnsemblCACNG6 - 19q13.42 [CytoView hg19]  CACNG6 - 19q13.42 [CytoView hg38]
Mapping of homologs : NCBICACNG6 [Mapview hg19]  CACNG6 [Mapview hg38]
OMIM606898   
Gene and transcription
Genbank (Entrez)AF288386 AF361352 BC021552 BX281606 DQ895210
RefSeq transcript (Entrez)NM_031897 NM_145814 NM_145815
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CACNG6
Cluster EST : UnigeneHs.631560 [ NCBI ]
CGAP (NCI)Hs.631560
Alternative Splicing GalleryENSG00000130433
Gene ExpressionCACNG6 [ NCBI-GEO ]   CACNG6 [ EBI - ARRAY_EXPRESS ]   CACNG6 [ SEEK ]   CACNG6 [ MEM ]
Gene Expression Viewer (FireBrowse)CACNG6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)59285
GTEX Portal (Tissue expression)CACNG6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BXT2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BXT2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BXT2
Splice isoforms : SwissVarQ9BXT2
PhosPhoSitePlusQ9BXT2
Domains : Interpro (EBI)PMP22/EMP/MP20/Claudin    VDCC_g6su    VDCC_gsu   
Domain families : Pfam (Sanger)Claudin_2 (PF13903)   
Domain families : Pfam (NCBI)pfam13903   
Conserved Domain (NCBI)CACNG6
DMDM Disease mutations59285
Blocks (Seattle)CACNG6
SuperfamilyQ9BXT2
Human Protein AtlasENSG00000130433
Peptide AtlasQ9BXT2
HPRD06061
IPIIPI00011072   IPI00157737   IPI00157910   
Protein Interaction databases
DIP (DOE-UCLA)Q9BXT2
IntAct (EBI)Q9BXT2
FunCoupENSG00000130433
BioGRIDCACNG6
STRING (EMBL)CACNG6
ZODIACCACNG6
Ontologies - Pathways
QuickGOQ9BXT2
Ontology : AmiGOvoltage-gated calcium channel activity  plasma membrane  voltage-gated calcium channel complex  calcium ion transport  regulation of ion transmembrane transport  cardiac conduction  calcium ion transmembrane transport  
Ontology : EGO-EBIvoltage-gated calcium channel activity  plasma membrane  voltage-gated calcium channel complex  calcium ion transport  regulation of ion transmembrane transport  cardiac conduction  calcium ion transmembrane transport  
Pathways : KEGGMAPK signaling pathway    Cardiac muscle contraction    Adrenergic signaling in cardiomyocytes    Hypertrophic cardiomyopathy (HCM)    Arrhythmogenic right ventricular cardiomyopathy (ARVC)    Dilated cardiomyopathy   
NDEx NetworkCACNG6
Atlas of Cancer Signalling NetworkCACNG6
Wikipedia pathwaysCACNG6
Orthology - Evolution
OrthoDB59285
GeneTree (enSembl)ENSG00000130433
Phylogenetic Trees/Animal Genes : TreeFamCACNG6
HOVERGENQ9BXT2
HOGENOMQ9BXT2
Homologs : HomoloGeneCACNG6
Homology/Alignments : Family Browser (UCSC)CACNG6
Gene fusions - Rearrangements
Fusion : MitelmanCACNG6/ZNF320 [19q13.42/19q13.41]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCACNG6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CACNG6
dbVarCACNG6
ClinVarCACNG6
1000_GenomesCACNG6 
Exome Variant ServerCACNG6
ExAC (Exome Aggregation Consortium)CACNG6 (select the gene name)
Genetic variants : HAPMAP59285
Genomic Variants (DGV)CACNG6 [DGVbeta]
DECIPHERCACNG6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCACNG6 
Mutations
ICGC Data PortalCACNG6 
TCGA Data PortalCACNG6 
Broad Tumor PortalCACNG6
OASIS PortalCACNG6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCACNG6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCACNG6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CACNG6
DgiDB (Drug Gene Interaction Database)CACNG6
DoCM (Curated mutations)CACNG6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CACNG6 (select a term)
intoGenCACNG6
Cancer3DCACNG6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606898   
Orphanet
MedgenCACNG6
Genetic Testing Registry CACNG6
NextProtQ9BXT2 [Medical]
TSGene59285
GENETestsCACNG6
Target ValidationCACNG6
Huge Navigator CACNG6 [HugePedia]
snp3D : Map Gene to Disease59285
BioCentury BCIQCACNG6
ClinGenCACNG6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD59285
Chemical/Pharm GKB GenePA26020
Clinical trialCACNG6
Miscellaneous
canSAR (ICR)CACNG6 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCACNG6
EVEXCACNG6
GoPubMedCACNG6
iHOPCACNG6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:00:14 CEST 2017

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