Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CACNG7 (calcium voltage-gated channel auxiliary subunit gamma 7)

Identity

Alias_namescalcium channel, voltage-dependent, gamma subunit 7
Other alias-
HGNC (Hugo) CACNG7
LocusID (NCBI) 59284
Atlas_Id 61377
Location 19q13.42  [Link to chromosome band 19q13]
Location_base_pair Starts at 53912737 and ends at 53943715 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CACNG7   13626
Cards
Entrez_Gene (NCBI)CACNG7  59284  calcium voltage-gated channel auxiliary subunit gamma 7
Aliases
GeneCards (Weizmann)CACNG7
Ensembl hg19 (Hinxton)ENSG00000105605 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000105605 [Gene_View]  chr19:53912737-53943715 [Contig_View]  CACNG7 [Vega]
ICGC DataPortalENSG00000105605
TCGA cBioPortalCACNG7
AceView (NCBI)CACNG7
Genatlas (Paris)CACNG7
WikiGenes59284
SOURCE (Princeton)CACNG7
Genetics Home Reference (NIH)CACNG7
Genomic and cartography
GoldenPath hg38 (UCSC)CACNG7  -     chr19:53912737-53943715 +  19q13.42   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CACNG7  -     19q13.42   [Description]    (hg19-Feb_2009)
EnsemblCACNG7 - 19q13.42 [CytoView hg19]  CACNG7 - 19q13.42 [CytoView hg38]
Mapping of homologs : NCBICACNG7 [Mapview hg19]  CACNG7 [Mapview hg38]
OMIM606899   
Gene and transcription
Genbank (Entrez)AF288387 AF361353 AF458897 AL537399 BC069332
RefSeq transcript (Entrez)NM_031896
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CACNG7
Cluster EST : UnigeneHs.631597 [ NCBI ]
CGAP (NCI)Hs.631597
Alternative Splicing GalleryENSG00000105605
Gene ExpressionCACNG7 [ NCBI-GEO ]   CACNG7 [ EBI - ARRAY_EXPRESS ]   CACNG7 [ SEEK ]   CACNG7 [ MEM ]
Gene Expression Viewer (FireBrowse)CACNG7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)59284
GTEX Portal (Tissue expression)CACNG7
Protein : pattern, domain, 3D structure
UniProt/SwissProtP62955   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP62955  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP62955
Splice isoforms : SwissVarP62955
PhosPhoSitePlusP62955
Domains : Interpro (EBI)PMP22/EMP/MP20/Claudin    VDCC_g7su    VDCC_gsu   
Domain families : Pfam (Sanger)Claudin_2 (PF13903)   
Domain families : Pfam (NCBI)pfam13903   
Conserved Domain (NCBI)CACNG7
DMDM Disease mutations59284
Blocks (Seattle)CACNG7
SuperfamilyP62955
Human Protein AtlasENSG00000105605
Peptide AtlasP62955
HPRD06062
IPIIPI00011071   IPI00657850   
Protein Interaction databases
DIP (DOE-UCLA)P62955
IntAct (EBI)P62955
FunCoupENSG00000105605
BioGRIDCACNG7
STRING (EMBL)CACNG7
ZODIACCACNG7
Ontologies - Pathways
QuickGOP62955
Ontology : AmiGOvoltage-gated calcium channel activity  voltage-gated calcium channel activity  plasma membrane  voltage-gated calcium channel complex  calcium ion transport  channel regulator activity  transmission of nerve impulse  AMPA glutamate receptor complex  AMPA glutamate receptor complex  cardiac conduction  calcium ion transmembrane transport  regulation of AMPA receptor activity  
Ontology : EGO-EBIvoltage-gated calcium channel activity  voltage-gated calcium channel activity  plasma membrane  voltage-gated calcium channel complex  calcium ion transport  channel regulator activity  transmission of nerve impulse  AMPA glutamate receptor complex  AMPA glutamate receptor complex  cardiac conduction  calcium ion transmembrane transport  regulation of AMPA receptor activity  
Pathways : KEGGMAPK signaling pathway    Cardiac muscle contraction    Adrenergic signaling in cardiomyocytes    Hypertrophic cardiomyopathy (HCM)    Arrhythmogenic right ventricular cardiomyopathy (ARVC)    Dilated cardiomyopathy   
NDEx NetworkCACNG7
Atlas of Cancer Signalling NetworkCACNG7
Wikipedia pathwaysCACNG7
Orthology - Evolution
OrthoDB59284
GeneTree (enSembl)ENSG00000105605
Phylogenetic Trees/Animal Genes : TreeFamCACNG7
HOVERGENP62955
HOGENOMP62955
Homologs : HomoloGeneCACNG7
Homology/Alignments : Family Browser (UCSC)CACNG7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCACNG7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CACNG7
dbVarCACNG7
ClinVarCACNG7
1000_GenomesCACNG7 
Exome Variant ServerCACNG7
ExAC (Exome Aggregation Consortium)CACNG7 (select the gene name)
Genetic variants : HAPMAP59284
Genomic Variants (DGV)CACNG7 [DGVbeta]
DECIPHERCACNG7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCACNG7 
Mutations
ICGC Data PortalCACNG7 
TCGA Data PortalCACNG7 
Broad Tumor PortalCACNG7
OASIS PortalCACNG7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCACNG7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCACNG7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CACNG7
DgiDB (Drug Gene Interaction Database)CACNG7
DoCM (Curated mutations)CACNG7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CACNG7 (select a term)
intoGenCACNG7
Cancer3DCACNG7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606899   
Orphanet
MedgenCACNG7
Genetic Testing Registry CACNG7
NextProtP62955 [Medical]
TSGene59284
GENETestsCACNG7
Target ValidationCACNG7
Huge Navigator CACNG7 [HugePedia]
snp3D : Map Gene to Disease59284
BioCentury BCIQCACNG7
ClinGenCACNG7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD59284
Chemical/Pharm GKB GenePA26021
Clinical trialCACNG7
Miscellaneous
canSAR (ICR)CACNG7 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCACNG7
EVEXCACNG7
GoPubMedCACNG7
iHOPCACNG7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:03:46 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.