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CACNG8 (calcium channel, voltage-dependent, gamma subunit 8)

Identity

Alias_namescalcium channel, voltage-dependent, gamma subunit 8
Other alias-
HGNC (Hugo) CACNG8
LocusID (NCBI) 59283
Atlas_Id 61378
Location 19q13.42  [Link to chromosome band 19q13]
Location_base_pair Starts at 54466290 and ends at 54493469 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CACNG8 (19q13.42) / BIN1 (2q14.3)CACNG8 (19q13.42) / TRIM41 (5q35.3)PTK2 (8q24.3) / CACNG8 (19q13.42)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CACNG8   13628
Cards
Entrez_Gene (NCBI)CACNG8  59283  calcium channel, voltage-dependent, gamma subunit 8
Aliases
GeneCards (Weizmann)CACNG8
Ensembl hg19 (Hinxton)ENSG00000142408 [Gene_View]  chr19:54466290-54493469 [Contig_View]  CACNG8 [Vega]
Ensembl hg38 (Hinxton)ENSG00000142408 [Gene_View]  chr19:54466290-54493469 [Contig_View]  CACNG8 [Vega]
ICGC DataPortalENSG00000142408
TCGA cBioPortalCACNG8
AceView (NCBI)CACNG8
Genatlas (Paris)CACNG8
WikiGenes59283
SOURCE (Princeton)CACNG8
Genetics Home Reference (NIH)CACNG8
Genomic and cartography
GoldenPath hg19 (UCSC)CACNG8  -     chr19:54466290-54493469 +  19q13.42   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CACNG8  -     19q13.42   [Description]    (hg38-Dec_2013)
EnsemblCACNG8 - 19q13.42 [CytoView hg19]  CACNG8 - 19q13.42 [CytoView hg38]
Mapping of homologs : NCBICACNG8 [Mapview hg19]  CACNG8 [Mapview hg38]
OMIM606900   
Gene and transcription
Genbank (Entrez)AF234892 AF288388 AF361354 AK055160 AK131287
RefSeq transcript (Entrez)NM_031895
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)CACNG8
Cluster EST : UnigeneHs.631595 [ NCBI ]
CGAP (NCI)Hs.631595
Alternative Splicing GalleryENSG00000142408
Gene ExpressionCACNG8 [ NCBI-GEO ]   CACNG8 [ EBI - ARRAY_EXPRESS ]   CACNG8 [ SEEK ]   CACNG8 [ MEM ]
Gene Expression Viewer (FireBrowse)CACNG8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)59283
GTEX Portal (Tissue expression)CACNG8
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WXS5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WXS5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WXS5
Splice isoforms : SwissVarQ8WXS5
PhosPhoSitePlusQ8WXS5
Domains : Interpro (EBI)PMP22/EMP/MP20/Claudin    VDCC_g8su    VDCC_gsu   
Domain families : Pfam (Sanger)PMP22_Claudin (PF00822)   
Domain families : Pfam (NCBI)pfam00822   
Conserved Domain (NCBI)CACNG8
DMDM Disease mutations59283
Blocks (Seattle)CACNG8
SuperfamilyQ8WXS5
Human Protein AtlasENSG00000142408
Peptide AtlasQ8WXS5
HPRD06063
IPIIPI00103604   
Protein Interaction databases
DIP (DOE-UCLA)Q8WXS5
IntAct (EBI)Q8WXS5
FunCoupENSG00000142408
BioGRIDCACNG8
STRING (EMBL)CACNG8
ZODIACCACNG8
Ontologies - Pathways
QuickGOQ8WXS5
Ontology : AmiGOvoltage-gated calcium channel activity  plasma membrane  voltage-gated calcium channel complex  calcium ion transport  synaptic transmission  postsynaptic density  cell junction  endocytic vesicle membrane  alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex  postsynaptic membrane  calcium ion transmembrane transport  regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity  
Ontology : EGO-EBIvoltage-gated calcium channel activity  plasma membrane  voltage-gated calcium channel complex  calcium ion transport  synaptic transmission  postsynaptic density  cell junction  endocytic vesicle membrane  alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex  postsynaptic membrane  calcium ion transmembrane transport  regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity  
Pathways : KEGGMAPK signaling pathway    Cardiac muscle contraction    Adrenergic signaling in cardiomyocytes    Hypertrophic cardiomyopathy (HCM)    Arrhythmogenic right ventricular cardiomyopathy (ARVC)    Dilated cardiomyopathy   
NDEx NetworkCACNG8
Atlas of Cancer Signalling NetworkCACNG8
Wikipedia pathwaysCACNG8
Orthology - Evolution
OrthoDB59283
GeneTree (enSembl)ENSG00000142408
Phylogenetic Trees/Animal Genes : TreeFamCACNG8
HOVERGENQ8WXS5
HOGENOMQ8WXS5
Homologs : HomoloGeneCACNG8
Homology/Alignments : Family Browser (UCSC)CACNG8
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCACNG8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CACNG8
dbVarCACNG8
ClinVarCACNG8
1000_GenomesCACNG8 
Exome Variant ServerCACNG8
ExAC (Exome Aggregation Consortium)CACNG8 (select the gene name)
Genetic variants : HAPMAP59283
Genomic Variants (DGV)CACNG8 [DGVbeta]
DECIPHER (Syndromes)19:54466290-54493469  ENSG00000142408
CONAN: Copy Number AnalysisCACNG8 
Mutations
ICGC Data PortalCACNG8 
TCGA Data PortalCACNG8 
Broad Tumor PortalCACNG8
OASIS PortalCACNG8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCACNG8  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCACNG8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CACNG8
DgiDB (Drug Gene Interaction Database)CACNG8
DoCM (Curated mutations)CACNG8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CACNG8 (select a term)
intoGenCACNG8
Cancer3DCACNG8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606900   
Orphanet
MedgenCACNG8
Genetic Testing Registry CACNG8
NextProtQ8WXS5 [Medical]
TSGene59283
GENETestsCACNG8
Huge Navigator CACNG8 [HugePedia]
snp3D : Map Gene to Disease59283
BioCentury BCIQCACNG8
ClinGenCACNG8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD59283
Chemical/Pharm GKB GenePA26022
Clinical trialCACNG8
Miscellaneous
canSAR (ICR)CACNG8 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCACNG8
EVEXCACNG8
GoPubMedCACNG8
iHOPCACNG8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:57:58 CET 2017

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