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CACTIN-AS1 (CACTIN antisense RNA 1)

Identity

Alias_namesC19orf29OS
C19orf29-AS1
chromosome 19 open reading frame 29 opposite strand
C19orf29 antisense RNA 1 (non-protein coding)
C19orf29 antisense RNA 1
Other alias
HGNC (Hugo) CACTIN-AS1
LocusID (NCBI) 404665
Atlas_Id 61379
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 3607247 and ends at 3613930 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CACTIN-AS1   31391
Cards
Entrez_Gene (NCBI)CACTIN-AS1  404665  CACTIN antisense RNA 1
AliasesC19orf29-AS1; C19orf29OS
GeneCards (Weizmann)CACTIN-AS1
Ensembl hg19 (Hinxton)ENSG00000226800 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000226800 [Gene_View]  chr19:3607247-3613930 [Contig_View]  CACTIN-AS1 [Vega]
ICGC DataPortalENSG00000226800
TCGA cBioPortalCACTIN-AS1
AceView (NCBI)CACTIN-AS1
Genatlas (Paris)CACTIN-AS1
WikiGenes404665
SOURCE (Princeton)CACTIN-AS1
Genetics Home Reference (NIH)CACTIN-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)CACTIN-AS1  -     chr19:3607247-3613930 +  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CACTIN-AS1  -     19p13.3   [Description]    (hg19-Feb_2009)
EnsemblCACTIN-AS1 - 19p13.3 [CytoView hg19]  CACTIN-AS1 - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBICACTIN-AS1 [Mapview hg19]  CACTIN-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK097999
RefSeq transcript (Entrez)NM_001012712
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CACTIN-AS1
Cluster EST : UnigeneHs.719726 [ NCBI ]
CGAP (NCI)Hs.719726
Alternative Splicing GalleryENSG00000226800
Gene ExpressionCACTIN-AS1 [ NCBI-GEO ]   CACTIN-AS1 [ EBI - ARRAY_EXPRESS ]   CACTIN-AS1 [ SEEK ]   CACTIN-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)CACTIN-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)404665
GTEX Portal (Tissue expression)CACTIN-AS1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N1I8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N1I8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N1I8
Splice isoforms : SwissVarQ8N1I8
PhosPhoSitePlusQ8N1I8
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CACTIN-AS1
DMDM Disease mutations404665
Blocks (Seattle)CACTIN-AS1
SuperfamilyQ8N1I8
Human Protein AtlasENSG00000226800
Peptide AtlasQ8N1I8
IPIIPI00909865   
Protein Interaction databases
DIP (DOE-UCLA)Q8N1I8
IntAct (EBI)Q8N1I8
FunCoupENSG00000226800
BioGRIDCACTIN-AS1
STRING (EMBL)CACTIN-AS1
ZODIACCACTIN-AS1
Ontologies - Pathways
QuickGOQ8N1I8
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCACTIN-AS1
Atlas of Cancer Signalling NetworkCACTIN-AS1
Wikipedia pathwaysCACTIN-AS1
Orthology - Evolution
OrthoDB404665
GeneTree (enSembl)ENSG00000226800
Phylogenetic Trees/Animal Genes : TreeFamCACTIN-AS1
HOVERGENQ8N1I8
HOGENOMQ8N1I8
Homologs : HomoloGeneCACTIN-AS1
Homology/Alignments : Family Browser (UCSC)CACTIN-AS1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCACTIN-AS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CACTIN-AS1
dbVarCACTIN-AS1
ClinVarCACTIN-AS1
1000_GenomesCACTIN-AS1 
Exome Variant ServerCACTIN-AS1
ExAC (Exome Aggregation Consortium)CACTIN-AS1 (select the gene name)
Genetic variants : HAPMAP404665
Genomic Variants (DGV)CACTIN-AS1 [DGVbeta]
DECIPHERCACTIN-AS1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCACTIN-AS1 
Mutations
ICGC Data PortalCACTIN-AS1 
TCGA Data PortalCACTIN-AS1 
Broad Tumor PortalCACTIN-AS1
OASIS PortalCACTIN-AS1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCACTIN-AS1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CACTIN-AS1
DgiDB (Drug Gene Interaction Database)CACTIN-AS1
DoCM (Curated mutations)CACTIN-AS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CACTIN-AS1 (select a term)
intoGenCACTIN-AS1
Cancer3DCACTIN-AS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCACTIN-AS1
Genetic Testing Registry CACTIN-AS1
NextProtQ8N1I8 [Medical]
TSGene404665
GENETestsCACTIN-AS1
Target ValidationCACTIN-AS1
Huge Navigator CACTIN-AS1 [HugePedia]
snp3D : Map Gene to Disease404665
BioCentury BCIQCACTIN-AS1
ClinGenCACTIN-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD404665
Chemical/Pharm GKB GenePA134866781
Clinical trialCACTIN-AS1
Miscellaneous
canSAR (ICR)CACTIN-AS1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCACTIN-AS1
EVEXCACTIN-AS1
GoPubMedCACTIN-AS1
iHOPCACTIN-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:03:46 CEST 2017

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