Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CACYBP (calcyclin binding protein)

Identity

Alias_symbol (synonym)SIP
S100A6BP
Other aliasGIG5
PNAS-107
HGNC (Hugo) CACYBP
LocusID (NCBI) 27101
Atlas_Id 43780
Location 1q25.1  [Link to chromosome band 1q25]
Location_base_pair Starts at 174999435 and ends at 175012027 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CACYBP (1q25.1) / CSTB (21q22.3)CACYBP (1q25.1) / RABGAP1L (1q25.1)RABGAP1L (1q25.1) / CACYBP (1q25.1)
TSPAN9 (12p13.33) / CACYBP (1q25.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CACYBP   30423
Cards
Entrez_Gene (NCBI)CACYBP  27101  calcyclin binding protein
AliasesGIG5; PNAS-107; S100A6BP; SIP
GeneCards (Weizmann)CACYBP
Ensembl hg19 (Hinxton)ENSG00000116161 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000116161 [Gene_View]  chr1:174999435-175012027 [Contig_View]  CACYBP [Vega]
ICGC DataPortalENSG00000116161
TCGA cBioPortalCACYBP
AceView (NCBI)CACYBP
Genatlas (Paris)CACYBP
WikiGenes27101
SOURCE (Princeton)CACYBP
Genetics Home Reference (NIH)CACYBP
Genomic and cartography
GoldenPath hg38 (UCSC)CACYBP  -     chr1:174999435-175012027 +  1q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CACYBP  -     1q25.1   [Description]    (hg19-Feb_2009)
EnsemblCACYBP - 1q25.1 [CytoView hg19]  CACYBP - 1q25.1 [CytoView hg38]
Mapping of homologs : NCBICACYBP [Mapview hg19]  CACYBP [Mapview hg38]
OMIM606186   
Gene and transcription
Genbank (Entrez)AF057356 AF275803 AF314752 AK093425 AK294042
RefSeq transcript (Entrez)NM_001007214 NM_014412
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CACYBP
Cluster EST : UnigeneHs.508524 [ NCBI ]
CGAP (NCI)Hs.508524
Alternative Splicing GalleryENSG00000116161
Gene ExpressionCACYBP [ NCBI-GEO ]   CACYBP [ EBI - ARRAY_EXPRESS ]   CACYBP [ SEEK ]   CACYBP [ MEM ]
Gene Expression Viewer (FireBrowse)CACYBP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27101
GTEX Portal (Tissue expression)CACYBP
Human Protein AtlasENSG00000116161-CACYBP [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HB71   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HB71  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HB71
Splice isoforms : SwissVarQ9HB71
PhosPhoSitePlusQ9HB71
Domaine pattern : Prosite (Expaxy)CS (PS51203)    SGS (PS51048)   
Domains : Interpro (EBI)CS_dom    HSP20-like_chaperone    SGS_dom    Siah-Interact_N   
Domain families : Pfam (Sanger)CS (PF04969)    SGS (PF05002)    Siah-Interact_N (PF09032)   
Domain families : Pfam (NCBI)pfam04969    pfam05002    pfam09032   
Conserved Domain (NCBI)CACYBP
DMDM Disease mutations27101
Blocks (Seattle)CACYBP
PDB (SRS)1X5M    2A25    2A26   
PDB (PDBSum)1X5M    2A25    2A26   
PDB (IMB)1X5M    2A25    2A26   
PDB (RSDB)1X5M    2A25    2A26   
Structural Biology KnowledgeBase1X5M    2A25    2A26   
SCOP (Structural Classification of Proteins)1X5M    2A25    2A26   
CATH (Classification of proteins structures)1X5M    2A25    2A26   
SuperfamilyQ9HB71
Human Protein Atlas [tissue]ENSG00000116161-CACYBP [tissue]
Peptide AtlasQ9HB71
HPRD07316
IPIIPI00395627   IPI00410678   IPI00552308   IPI00977736   IPI01020666   
Protein Interaction databases
DIP (DOE-UCLA)Q9HB71
IntAct (EBI)Q9HB71
FunCoupENSG00000116161
BioGRIDCACYBP
STRING (EMBL)CACYBP
ZODIACCACYBP
Ontologies - Pathways
QuickGOQ9HB71
Ontology : AmiGOprotein binding  nuclear envelope lumen  nucleoplasm  cytosol  aging  SCF ubiquitin ligase complex  protein domain specific binding  beta-catenin destruction complex  ubiquitin protein ligase binding  protein homodimerization activity  neuron projection  cell body  positive regulation of DNA replication  cardiac muscle cell differentiation  response to growth hormone  negative regulation of cell death  extracellular exosome  cellular response to calcium ion  
Ontology : EGO-EBIprotein binding  nuclear envelope lumen  nucleoplasm  cytosol  aging  SCF ubiquitin ligase complex  protein domain specific binding  beta-catenin destruction complex  ubiquitin protein ligase binding  protein homodimerization activity  neuron projection  cell body  positive regulation of DNA replication  cardiac muscle cell differentiation  response to growth hormone  negative regulation of cell death  extracellular exosome  cellular response to calcium ion  
Pathways : KEGGWnt signaling pathway   
NDEx NetworkCACYBP
Atlas of Cancer Signalling NetworkCACYBP
Wikipedia pathwaysCACYBP
Orthology - Evolution
OrthoDB27101
GeneTree (enSembl)ENSG00000116161
Phylogenetic Trees/Animal Genes : TreeFamCACYBP
HOVERGENQ9HB71
HOGENOMQ9HB71
Homologs : HomoloGeneCACYBP
Homology/Alignments : Family Browser (UCSC)CACYBP
Gene fusions - Rearrangements
Tumor Fusion PortalCACYBP
Fusion Cancer (Beijing)CACYBP [1q25.1]  -  CSTB [21q22.3]  [FUSC000965]
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCACYBP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CACYBP
dbVarCACYBP
ClinVarCACYBP
1000_GenomesCACYBP 
Exome Variant ServerCACYBP
ExAC (Exome Aggregation Consortium)ENSG00000116161
GNOMAD BrowserENSG00000116161
Genetic variants : HAPMAP27101
Genomic Variants (DGV)CACYBP [DGVbeta]
DECIPHERCACYBP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCACYBP 
Mutations
ICGC Data PortalCACYBP 
TCGA Data PortalCACYBP 
Broad Tumor PortalCACYBP
OASIS PortalCACYBP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCACYBP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCACYBP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CACYBP
DgiDB (Drug Gene Interaction Database)CACYBP
DoCM (Curated mutations)CACYBP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CACYBP (select a term)
intoGenCACYBP
Cancer3DCACYBP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606186   
Orphanet
DisGeNETCACYBP
MedgenCACYBP
Genetic Testing Registry CACYBP
NextProtQ9HB71 [Medical]
TSGene27101
GENETestsCACYBP
Target ValidationCACYBP
Huge Navigator CACYBP [HugePedia]
snp3D : Map Gene to Disease27101
BioCentury BCIQCACYBP
ClinGenCACYBP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD27101
Chemical/Pharm GKB GenePA134894213
Clinical trialCACYBP
Miscellaneous
canSAR (ICR)CACYBP (select the gene name)
Probes
Litterature
PubMed59 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCACYBP
EVEXCACYBP
GoPubMedCACYBP
iHOPCACYBP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:05:46 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.