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CADM1 (cell adhesion molecule 1)

Identity

Alias (NCBI)BL2
IGSF4
IGSF4A
NECL2
Necl-2
RA175
ST17
SYNCAM
TSLC1
sTSLC-1
sgIGSF
synCAM1
HGNC (Hugo) CADM1
HGNC Alias symbNECL2
ST17
BL2
SYNCAM
IGSF4A
Necl-2
SYNCAM1
RA175
HGNC Alias namenectin-like 2
HGNC Previous nameTSLC1
 IGSF4
HGNC Previous nametumor suppressor in lung cancer 1
 immunoglobulin superfamily, member 4
LocusID (NCBI) 23705
Atlas_Id 40936
Location 11q23.3  [Link to chromosome band 11q23]
Location_base_pair Starts at 115169236 and ends at 115504415 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CADM1 (11q23.3) / ARCN1 (11q23.3)CADM1 (11q23.3) / COL1A2 (7q21.3)CADM1 (11q23.3) / MYO18A (17q11.2)
CADM1 (11q23.3) / TIMM9 (14q23.1)TENM4 (11q14.1) / CADM1 (11q23.3)CADM1 11q23.3 / ARCN1 11q23.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Leukemias implicated (Data extracted from papers in the Atlas) [ 2 ]
  t(11;11)(p15;q23) NUP98/CADM1
t(11;11)(q14;q23) TENM4/CADM1


External links

Nomenclature
HGNC (Hugo)CADM1   5951
Cards
Entrez_Gene (NCBI)CADM1    cell adhesion molecule 1
AliasesBL2; IGSF4; IGSF4A; NECL2; 
Necl-2; RA175; ST17; SYNCAM; TSLC1; sTSLC-1; sgIGSF; synCAM1
GeneCards (Weizmann)CADM1
Ensembl hg19 (Hinxton)ENSG00000182985 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182985 [Gene_View]  ENSG00000182985 [Sequence]  chr11:115169236-115504415 [Contig_View]  CADM1 [Vega]
ICGC DataPortalENSG00000182985
TCGA cBioPortalCADM1
AceView (NCBI)CADM1
Genatlas (Paris)CADM1
SOURCE (Princeton)CADM1
Genetics Home Reference (NIH)CADM1
Genomic and cartography
GoldenPath hg38 (UCSC)CADM1  -     chr11:115169236-115504415 -  11q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CADM1  -     11q23.3   [Description]    (hg19-Feb_2009)
GoldenPathCADM1 - 11q23.3 [CytoView hg19]  CADM1 - 11q23.3 [CytoView hg38]
ImmunoBaseENSG00000182985
Genome Data Viewer NCBICADM1 [Mapview hg19]  
OMIM605686   
Gene and transcription
Genbank (Entrez)AB094146 AF132811 AK075502 AK172730 AK315245
RefSeq transcript (Entrez)NM_001098517 NM_001301043 NM_001301044 NM_001301045 NM_014333
Consensus coding sequences : CCDS (NCBI)CADM1
Gene ExpressionCADM1 [ NCBI-GEO ]   CADM1 [ EBI - ARRAY_EXPRESS ]   CADM1 [ SEEK ]   CADM1 [ MEM ]
Gene Expression Viewer (FireBrowse)CADM1 [ Firebrowse - Broad ]
GenevisibleExpression of CADM1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23705
GTEX Portal (Tissue expression)CADM1
Human Protein AtlasENSG00000182985-CADM1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CADM1
Human Protein Atlas [tissue]ENSG00000182985-CADM1 [tissue]
HPRD05746
Protein Interaction databases
BioGRIDCADM1
STRING (EMBL)CADM1
ZODIACCADM1
Ontologies - Pathways
Litterature
PubMed198 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCADM1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:02:02 CEST 2021

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