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CADM3 (cell adhesion molecule 3)

Identity

Other namesBIgR
IGSF4B
NECL1
Necl-1
TSLL1
synCAM3
HGNC (Hugo) CADM3
LocusID (NCBI) 57863
Location 1q23.2
Location_base_pair Starts at 159141414 and ends at 159172932 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)CADM3   17601
Entrez_Gene (NCBI)CADM3  57863  cell adhesion molecule 3
Cards
GeneCards (Weizmann)CADM3
Ensembl (Hinxton)ENSG00000162706 [Gene_View]  chr1:159141414-159172932 [Contig_View]  CADM3 [Vega]
AceView (NCBI)CADM3
Genatlas (Paris)CADM3
SOURCE (Stanford)NM_001127173 NM_021189
Genomic and cartography
GoldenPath (UCSC)CADM3  -  1q23.2   chr1:159141414-159172932 +  1q23.2   [Description]    (hg19-Feb_2009)
EnsemblCADM3 - 1q23.2 [CytoView]
Mapping of homologs : NCBICADM3 [Mapview]
OMIM609743   
Gene and transcription
Genbank (Entrez)AF062733 AF363367 AF529206 AK001560 AK289541
RefSeq transcript (SRS)NM_001127173 NM_021189
RefSeq transcript (Entrez)NM_001127173 NM_021189
RefSeq genomic (SRS)AC_000133 NC_000001 NC_018912 NT_004487 NW_001838531 NW_004077999
RefSeq genomic (Entrez)AC_000133 NC_000001 NC_018912 NT_004487 NW_001838531 NW_004077999
Consensus coding sequences : CCDS (NCBI)CADM3
Cluster EST : UnigeneHs.365689 [ SRS ] Hs.365689 [ NCBI ]
CGAP (NCI)Hs.365689
Alternative Splicing : Fast-db (Paris)GSHG0001075
Alternative Splicing GalleryENSG00000162706
Gene ExpressionCADM3 [ NCBI-GEO ]   CADM3 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N126 (SRS) Q8N126 (Uniprot)
NextProtQ8N126
With graphics : InterProQ8N126
Splice isoforms : SwissVarQ8N126(Swissvar)
Domaine pattern : Prosite (SRS)IG_LIKE (PS50835)   
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (SRS)CD80_C2-set    Ig-like    Ig-like_fold    Ig_sub    Ig_sub2    Ig_V-set    Neurexin-like   
Domains : Interpro (EBI)CD80_C2-set    Ig-like    Ig-like_fold    Ig_sub    Ig_sub2    Ig_V-set    Neurexin-like   
Related proteins : CluSTrQ8N126
Domain families : Pfam (SRS)C2-set_2 (PF08205)    V-set (PF07686)   
Domain families : Pfam (Sanger)C2-set_2 (PF08205)    V-set (PF07686)   
Domain families : Pfam (NCBI)pfam08205    pfam07686   
Domain families : Smart (EMBL)4.1m (SM00294)  IG (SM00409)  IGc2 (SM00408)  
DMDM57863
Blocks (Seattle)Q8N126
PDB (SRS)1Z9M   
PDB (PDBSum)1Z9M   
PDB (IMB)1Z9M   
PDB (RSDB)1Z9M   
Human Protein AtlasENSG00000162706
HPRD13733
IPIIPI00166048   IPI00009619   IPI00383615   
Protein Interaction databases
DIP (DOE-UCLA)Q8N126
IntAct (EBI)Q8N126
FunCoupENSG00000162706
REACTOMECADM3
Protein Interaction Database57863
BioGRIDCADM3
InParanoidQ8N126
Interologous Interaction database Q8N126
IntegromeDBCADM3
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)CADM3
SNP (GeneSNP Utah)CADM3
SNP : HGBaseCADM3
Genetic variants : HAPMAPCADM3
Somatic Mutations in Cancer : COSMICCADM3 
CONAN: Copy Number AnalysisCADM3 
Mutations and Diseases : HGMDCADM3
OMIM609743   
GENETests609743   
Disease Genetic AssociationCADM3
Huge Navigator CADM3 [HugePedia]  CADM3 [HugeCancerGEM]
Genomic VariantsCADM3  CADM3 [DGVbeta]
snp3D : Map Gene to Disease57863
General knowledge
Homologs : HomoloGeneCADM3
Homology/Alignments : Family Browser (UCSC)CADM3
Phylogenetic Trees/Animal Genes : TreeFamCADM3
Chemical/Protein Interactions : CTD57863
Chemical/Pharm GKB GenePA162380906
Clinical trialCADM3
Cancer Resource (Charite)ENSG00000162706
Ontology : AmiGOplasma membrane  cell-cell junction  homophilic cell adhesion  heterophilic cell-cell adhesion  protein localization  integral to membrane  cell junction assembly  adherens junction organization  protein homodimerization activity  cell-cell junction organization  
Ontology : EGO-EBIplasma membrane  cell-cell junction  homophilic cell adhesion  heterophilic cell-cell adhesion  protein localization  integral to membrane  cell junction assembly  adherens junction organization  protein homodimerization activity  cell-cell junction organization  
Pathways : KEGGCell adhesion molecules (CAMs)
Other databases
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
PubGeneCADM3
iHOPCADM3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:31:52 CEST 2013
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