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CADPS (Ca2+ dependent secretion activator)

Identity

Alias_namesCa?dependent secretion activator
Ca2 dependent secretion activator
Alias_symbol (synonym)CAPS
KIAA1121
CAPS1
UNC-31
Other aliasCADPS1
HGNC (Hugo) CADPS
LocusID (NCBI) 8618
Atlas_Id 52513
Location 3p14.2  [Link to chromosome band 3p14]
Location_base_pair Starts at 62384021 and ends at 62861064 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CADPS (3p14.2) / AMY2B (1p21.1)CADPS (3p14.2) / FHIT (3p14.2)CADPS (3p14.2) / SIPA1L1 (14q24.2)
FHIT (3p14.2) / CADPS (3p14.2)KIF21A (12q12) / CADPS (3p14.2)PDK3 (Xp22.11) / CADPS (3p14.2)
RAD50 (5q31.1) / CADPS (3p14.2)CADPS 3p14.2 / FHIT 3p14.2FHIT 3p14.2 / CADPS 3p14.2
PDK3 Xp22.11 / CADPS 3p14.2RAD50 5q31.1 / CADPS 3p14.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CADPS   1426
Cards
Entrez_Gene (NCBI)CADPS  8618  Ca2+ dependent secretion activator
AliasesCADPS1; CAPS; CAPS1; UNC-31
GeneCards (Weizmann)CADPS
Ensembl hg19 (Hinxton)ENSG00000163618 [Gene_View]  chr3:62384021-62861064 [Contig_View]  CADPS [Vega]
Ensembl hg38 (Hinxton)ENSG00000163618 [Gene_View]  chr3:62384021-62861064 [Contig_View]  CADPS [Vega]
ICGC DataPortalENSG00000163618
TCGA cBioPortalCADPS
AceView (NCBI)CADPS
Genatlas (Paris)CADPS
WikiGenes8618
SOURCE (Princeton)CADPS
Genetics Home Reference (NIH)CADPS
Genomic and cartography
GoldenPath hg19 (UCSC)CADPS  -     chr3:62384021-62861064 -  3p14.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CADPS  -     3p14.2   [Description]    (hg38-Dec_2013)
EnsemblCADPS - 3p14.2 [CytoView hg19]  CADPS - 3p14.2 [CytoView hg38]
Mapping of homologs : NCBICADPS [Mapview hg19]  CADPS [Mapview hg38]
OMIM604667   
Gene and transcription
Genbank (Entrez)AB032947 AB593079 AF458662 AK000873 AK127506
RefSeq transcript (Entrez)NM_003716 NM_183393 NM_183394
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_022517 NW_004929309
Consensus coding sequences : CCDS (NCBI)CADPS
Cluster EST : UnigeneHs.654933 [ NCBI ]
CGAP (NCI)Hs.654933
Alternative Splicing GalleryENSG00000163618
Gene ExpressionCADPS [ NCBI-GEO ]   CADPS [ EBI - ARRAY_EXPRESS ]   CADPS [ SEEK ]   CADPS [ MEM ]
Gene Expression Viewer (FireBrowse)CADPS [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8618
GTEX Portal (Tissue expression)CADPS
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9ULU8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9ULU8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9ULU8
Splice isoforms : SwissVarQ9ULU8
PhosPhoSitePlusQ9ULU8
Domaine pattern : Prosite (Expaxy)MHD1 (PS51258)    PH_DOMAIN (PS50003)   
Domains : Interpro (EBI)C2_dom    Ca-dep_secretion_activator    Munc13_1    PH_dom-like    PH_domain   
Domain families : Pfam (Sanger)DUF1041 (PF06292)    PH (PF00169)   
Domain families : Pfam (NCBI)pfam06292    pfam00169   
Domain families : Smart (EMBL)C2 (SM00239)  PH (SM00233)  
Conserved Domain (NCBI)CADPS
DMDM Disease mutations8618
Blocks (Seattle)CADPS
PDB (SRS)1WI1   
PDB (PDBSum)1WI1   
PDB (IMB)1WI1   
PDB (RSDB)1WI1   
Structural Biology KnowledgeBase1WI1   
SCOP (Structural Classification of Proteins)1WI1   
CATH (Classification of proteins structures)1WI1   
SuperfamilyQ9ULU8
Human Protein AtlasENSG00000163618
Peptide AtlasQ9ULU8
HPRD05236
IPIIPI00297412   IPI00384808   IPI00374128   IPI00384091   IPI00945443   IPI00747400   IPI00945992   IPI00945819   IPI00946910   IPI01010254   
Protein Interaction databases
DIP (DOE-UCLA)Q9ULU8
IntAct (EBI)Q9ULU8
FunCoupENSG00000163618
BioGRIDCADPS
STRING (EMBL)CADPS
ZODIACCADPS
Ontologies - Pathways
QuickGOQ9ULU8
Ontology : AmiGOprotein binding  cytosol  exocytosis  lipid binding  protein transport  vesicle organization  synaptic vesicle priming  protein kinase binding  cell junction  cytoplasmic vesicle membrane  metal ion binding  catecholamine secretion  presynapse  
Ontology : EGO-EBIprotein binding  cytosol  exocytosis  lipid binding  protein transport  vesicle organization  synaptic vesicle priming  protein kinase binding  cell junction  cytoplasmic vesicle membrane  metal ion binding  catecholamine secretion  presynapse  
NDEx NetworkCADPS
Atlas of Cancer Signalling NetworkCADPS
Wikipedia pathwaysCADPS
Orthology - Evolution
OrthoDB8618
GeneTree (enSembl)ENSG00000163618
Phylogenetic Trees/Animal Genes : TreeFamCADPS
HOVERGENQ9ULU8
HOGENOMQ9ULU8
Homologs : HomoloGeneCADPS
Homology/Alignments : Family Browser (UCSC)CADPS
Gene fusions - Rearrangements
Fusion : MitelmanCADPS/FHIT [3p14.2/3p14.2]  
Fusion : MitelmanFHIT/CADPS [3p14.2/3p14.2]  [t(3;3)(p14;p14)]  
Fusion : MitelmanPDK3/CADPS [Xp22.11/3p14.2]  [t(X;3)(p22;p14)]  
Fusion : MitelmanRAD50/CADPS [5q31.1/3p14.2]  [t(3;5)(p14;q31)]  
Fusion: TCGACADPS 3p14.2 FHIT 3p14.2 BRCA
Fusion: TCGAFHIT 3p14.2 CADPS 3p14.2 LUAD
Fusion: TCGAPDK3 Xp22.11 CADPS 3p14.2 PRAD
Fusion: TCGARAD50 5q31.1 CADPS 3p14.2 LGG
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCADPS [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CADPS
dbVarCADPS
ClinVarCADPS
1000_GenomesCADPS 
Exome Variant ServerCADPS
ExAC (Exome Aggregation Consortium)CADPS (select the gene name)
Genetic variants : HAPMAP8618
Genomic Variants (DGV)CADPS [DGVbeta]
DECIPHER (Syndromes)3:62384021-62861064  ENSG00000163618
CONAN: Copy Number AnalysisCADPS 
Mutations
ICGC Data PortalCADPS 
TCGA Data PortalCADPS 
Broad Tumor PortalCADPS
OASIS PortalCADPS [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCADPS  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCADPS
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CADPS
DgiDB (Drug Gene Interaction Database)CADPS
DoCM (Curated mutations)CADPS (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CADPS (select a term)
intoGenCADPS
Cancer3DCADPS(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604667   
Orphanet
MedgenCADPS
Genetic Testing Registry CADPS
NextProtQ9ULU8 [Medical]
TSGene8618
GENETestsCADPS
Huge Navigator CADPS [HugePedia]
snp3D : Map Gene to Disease8618
BioCentury BCIQCADPS
ClinGenCADPS
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8618
Chemical/Pharm GKB GenePA26024
Clinical trialCADPS
Miscellaneous
canSAR (ICR)CADPS (select the gene name)
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCADPS
EVEXCADPS
GoPubMedCADPS
iHOPCADPS
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:58:30 CET 2017

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