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CADPS2 (calcium dependent secretion activator 2)

Identity

Alias_namesCa++-dependent activator protein for secretion 2
Ca2+ dependent secretion activator 2
Alias_symbol (synonym)CAPS2
Other alias
HGNC (Hugo) CADPS2
LocusID (NCBI) 93664
Atlas_Id 61383
Location 7q31.32  [Link to chromosome band 7q31]
Location_base_pair Starts at 122318424 and ends at 122886759 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CADPS2 (7q31.32) / ARMCX6 (Xq22.1)CADPS2 (7q31.32) / DHCR7 (11q13.4)CADPS2 (7q31.32) / LMOD2 (7q31.32)
CADPS2 (7q31.32) / LOC440354 ()DENND1A (9q33.3) / CADPS2 (7q31.32)IL6R (1q21.3) / CADPS2 (7q31.32)
SPTAN1 (9q34.11) / CADPS2 (7q31.32)CADPS2 LMOD2CADPS2 DHCR7
DENND1A CADPS2SPTAN1 CADPS2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CADPS2   16018
Cards
Entrez_Gene (NCBI)CADPS2  93664  calcium dependent secretion activator 2
AliasesCAPS2
GeneCards (Weizmann)CADPS2
Ensembl hg19 (Hinxton)ENSG00000081803 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000081803 [Gene_View]  chr7:122318424-122886759 [Contig_View]  CADPS2 [Vega]
ICGC DataPortalENSG00000081803
TCGA cBioPortalCADPS2
AceView (NCBI)CADPS2
Genatlas (Paris)CADPS2
WikiGenes93664
SOURCE (Princeton)CADPS2
Genetics Home Reference (NIH)CADPS2
Genomic and cartography
GoldenPath hg38 (UCSC)CADPS2  -     chr7:122318424-122886759 -  7q31.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CADPS2  -     7q31.32   [Description]    (hg19-Feb_2009)
EnsemblCADPS2 - 7q31.32 [CytoView hg19]  CADPS2 - 7q31.32 [CytoView hg38]
Mapping of homologs : NCBICADPS2 [Mapview hg19]  CADPS2 [Mapview hg38]
OMIM609978   
Gene and transcription
Genbank (Entrez)AB046811 AF401638 AK000768 AK025672 AK054853
RefSeq transcript (Entrez)NM_001009571 NM_001167940 NM_017954
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CADPS2
Cluster EST : UnigeneHs.649459 [ NCBI ]
CGAP (NCI)Hs.649459
Alternative Splicing GalleryENSG00000081803
Gene ExpressionCADPS2 [ NCBI-GEO ]   CADPS2 [ EBI - ARRAY_EXPRESS ]   CADPS2 [ SEEK ]   CADPS2 [ MEM ]
Gene Expression Viewer (FireBrowse)CADPS2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)93664
GTEX Portal (Tissue expression)CADPS2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86UW7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86UW7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86UW7
Splice isoforms : SwissVarQ86UW7
PhosPhoSitePlusQ86UW7
Domaine pattern : Prosite (Expaxy)MHD1 (PS51258)    PH_DOMAIN (PS50003)   
Domains : Interpro (EBI)C2_dom    CAPS    CAPS_dom    Munc13_1    PH_dom-like    PH_domain   
Domain families : Pfam (Sanger)DUF1041 (PF06292)    PH (PF00169)   
Domain families : Pfam (NCBI)pfam06292    pfam00169   
Domain families : Smart (EMBL)DUF1041 (SM01145)  PH (SM00233)  
Conserved Domain (NCBI)CADPS2
DMDM Disease mutations93664
Blocks (Seattle)CADPS2
SuperfamilyQ86UW7
Human Protein AtlasENSG00000081803
Peptide AtlasQ86UW7
HPRD12996
IPIIPI00550275   IPI00873837   IPI00328826   IPI00947426   IPI00945569   IPI00946463   IPI00952785   IPI01025800   
Protein Interaction databases
DIP (DOE-UCLA)Q86UW7
IntAct (EBI)Q86UW7
FunCoupENSG00000081803
BioGRIDCADPS2
STRING (EMBL)CADPS2
ZODIACCADPS2
Ontologies - Pathways
QuickGOQ86UW7
Ontology : AmiGOnucleoplasm  lipid binding  cellular response to starvation  protein transport  synaptic vesicle priming  cell junction  cytoplasmic vesicle membrane  presynaptic membrane  intracellular membrane-bounded organelle  postsynaptic membrane  positive regulation of exocytosis  metal ion binding  dense core granule exocytosis  
Ontology : EGO-EBInucleoplasm  lipid binding  cellular response to starvation  protein transport  synaptic vesicle priming  cell junction  cytoplasmic vesicle membrane  presynaptic membrane  intracellular membrane-bounded organelle  postsynaptic membrane  positive regulation of exocytosis  metal ion binding  dense core granule exocytosis  
NDEx NetworkCADPS2
Atlas of Cancer Signalling NetworkCADPS2
Wikipedia pathwaysCADPS2
Orthology - Evolution
OrthoDB93664
GeneTree (enSembl)ENSG00000081803
Phylogenetic Trees/Animal Genes : TreeFamCADPS2
HOVERGENQ86UW7
HOGENOMQ86UW7
Homologs : HomoloGeneCADPS2
Homology/Alignments : Family Browser (UCSC)CADPS2
Gene fusions - Rearrangements
Fusion: TCGACADPS2 LMOD2
Fusion: TCGACADPS2 DHCR7
Fusion: TCGADENND1A CADPS2
Fusion: TCGASPTAN1 CADPS2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCADPS2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CADPS2
dbVarCADPS2
ClinVarCADPS2
1000_GenomesCADPS2 
Exome Variant ServerCADPS2
ExAC (Exome Aggregation Consortium)CADPS2 (select the gene name)
Genetic variants : HAPMAP93664
Genomic Variants (DGV)CADPS2 [DGVbeta]
DECIPHERCADPS2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCADPS2 
Mutations
ICGC Data PortalCADPS2 
TCGA Data PortalCADPS2 
Broad Tumor PortalCADPS2
OASIS PortalCADPS2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCADPS2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCADPS2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CADPS2
DgiDB (Drug Gene Interaction Database)CADPS2
DoCM (Curated mutations)CADPS2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CADPS2 (select a term)
intoGenCADPS2
Cancer3DCADPS2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609978   
Orphanet
MedgenCADPS2
Genetic Testing Registry CADPS2
NextProtQ86UW7 [Medical]
TSGene93664
GENETestsCADPS2
Target ValidationCADPS2
Huge Navigator CADPS2 [HugePedia]
snp3D : Map Gene to Disease93664
BioCentury BCIQCADPS2
ClinGenCADPS2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD93664
Chemical/Pharm GKB GenePA26025
Clinical trialCADPS2
Miscellaneous
canSAR (ICR)CADPS2 (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCADPS2
EVEXCADPS2
GoPubMedCADPS2
iHOPCADPS2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:03:47 CEST 2017

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