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CAHM (colon adenocarcinoma hypermethylated)

Identity

Alias_symbol (synonym)LINC00468
Other alias
HGNC (Hugo) CAHM
LocusID (NCBI) 100526820
Atlas_Id 52381
Location 6q26  [Link to chromosome band 6q26]
Location_base_pair Starts at 163413065 and ends at 163413950 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CAHM   42860
Cards
Entrez_Gene (NCBI)CAHM  100526820  colon adenocarcinoma hypermethylated
AliasesLINC00468
GeneCards (Weizmann)CAHM
Ensembl hg19 (Hinxton)ENSG00000270419 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000270419 [Gene_View]  ENSG00000270419 [Sequence]  chr6:163413065-163413950 [Contig_View]  CAHM [Vega]
ICGC DataPortalENSG00000270419
TCGA cBioPortalCAHM
AceView (NCBI)CAHM
Genatlas (Paris)CAHM
WikiGenes100526820
SOURCE (Princeton)CAHM
Genetics Home Reference (NIH)CAHM
Genomic and cartography
GoldenPath hg38 (UCSC)CAHM  -     chr6:163413065-163413950 -  6q26   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CAHM  -     6q26   [Description]    (hg19-Feb_2009)
EnsemblCAHM - 6q26 [CytoView hg19]  CAHM - 6q26 [CytoView hg38]
Mapping of homologs : NCBICAHM [Mapview hg19]  CAHM [Mapview hg38]
OMIM615930   
Gene and transcription
Genbank (Entrez)BG168587 BQ771676 BX381206 CA945055
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CAHM
Cluster EST : UnigeneHs.644159 [ NCBI ]
CGAP (NCI)Hs.644159
Alternative Splicing GalleryENSG00000270419
Gene ExpressionCAHM [ NCBI-GEO ]   CAHM [ EBI - ARRAY_EXPRESS ]   CAHM [ SEEK ]   CAHM [ MEM ]
Gene Expression Viewer (FireBrowse)CAHM [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100526820
GTEX Portal (Tissue expression)CAHM
Human Protein AtlasENSG00000270419-CAHM [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CAHM
DMDM Disease mutations100526820
Blocks (Seattle)CAHM
Human Protein Atlas [tissue]ENSG00000270419-CAHM [tissue]
Protein Interaction databases
FunCoupENSG00000270419
BioGRIDCAHM
STRING (EMBL)CAHM
ZODIACCAHM
Ontologies - Pathways
Huge Navigator CAHM [HugePedia]
snp3D : Map Gene to Disease100526820
BioCentury BCIQCAHM
ClinGenCAHM
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100526820
Clinical trialCAHM
Miscellaneous
canSAR (ICR)CAHM (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCAHM
EVEXCAHM
GoPubMedCAHM
iHOPCAHM
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Aug 27 11:12:47 CEST 2018

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