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CALB2 (calbindin 2)

Identity

Alias_namescalbindin 2
Alias_symbol (synonym)CAL2
Other aliasCAB29
CR
HGNC (Hugo) CALB2
LocusID (NCBI) 794
Atlas_Id 45701
Location 16q22.2  [Link to chromosome band 16q22]
Location_base_pair Starts at 71358713 and ends at 71390438 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CYB5B (16q22.1) / CALB2 (16q22.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CALB2   1435
Cards
Entrez_Gene (NCBI)CALB2  794  calbindin 2
AliasesCAB29; CAL2; CR
GeneCards (Weizmann)CALB2
Ensembl hg19 (Hinxton)ENSG00000172137 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172137 [Gene_View]  chr16:71358713-71390438 [Contig_View]  CALB2 [Vega]
ICGC DataPortalENSG00000172137
TCGA cBioPortalCALB2
AceView (NCBI)CALB2
Genatlas (Paris)CALB2
WikiGenes794
SOURCE (Princeton)CALB2
Genetics Home Reference (NIH)CALB2
Genomic and cartography
GoldenPath hg38 (UCSC)CALB2  -     chr16:71358713-71390438 +  16q22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CALB2  -     16q22.2   [Description]    (hg19-Feb_2009)
EnsemblCALB2 - 16q22.2 [CytoView hg19]  CALB2 - 16q22.2 [CytoView hg38]
Mapping of homologs : NCBICALB2 [Mapview hg19]  CALB2 [Mapview hg38]
OMIM114051   
Gene and transcription
Genbank (Entrez)AK222495 AK222648 AK291096 BC015484 BM664507
RefSeq transcript (Entrez)NM_001740 NM_007087 NM_007088
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CALB2
Cluster EST : UnigeneHs.106857 [ NCBI ]
CGAP (NCI)Hs.106857
Alternative Splicing GalleryENSG00000172137
Gene ExpressionCALB2 [ NCBI-GEO ]   CALB2 [ EBI - ARRAY_EXPRESS ]   CALB2 [ SEEK ]   CALB2 [ MEM ]
Gene Expression Viewer (FireBrowse)CALB2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)794
GTEX Portal (Tissue expression)CALB2
Protein : pattern, domain, 3D structure
UniProt/SwissProtP22676   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP22676  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP22676
Splice isoforms : SwissVarP22676
PhosPhoSitePlusP22676
Domaine pattern : Prosite (Expaxy)EF_HAND_1 (PS00018)    EF_HAND_2 (PS50222)   
Domains : Interpro (EBI)CALB2    EF-hand-dom_pair    EF_Hand_1_Ca_BS    EF_hand_dom   
Domain families : Pfam (Sanger)EF-hand_6 (PF13405)    EF-hand_7 (PF13499)   
Domain families : Pfam (NCBI)pfam13405    pfam13499   
Domain families : Smart (EMBL)EFh (SM00054)  
Conserved Domain (NCBI)CALB2
DMDM Disease mutations794
Blocks (Seattle)CALB2
SuperfamilyP22676
Human Protein AtlasENSG00000172137
Peptide AtlasP22676
HPRD00230
IPIIPI00027264   IPI00413067   
Protein Interaction databases
DIP (DOE-UCLA)P22676
IntAct (EBI)P22676
FunCoupENSG00000172137
BioGRIDCALB2
STRING (EMBL)CALB2
ZODIACCALB2
Ontologies - Pathways
QuickGOP22676
Ontology : AmiGOcalcium ion binding  nucleus  cytosol  cytosol  gap junction  neuron projection  terminal bouton  synapse  regulation of cytosolic calcium ion concentration  
Ontology : EGO-EBIcalcium ion binding  nucleus  cytosol  cytosol  gap junction  neuron projection  terminal bouton  synapse  regulation of cytosolic calcium ion concentration  
NDEx NetworkCALB2
Atlas of Cancer Signalling NetworkCALB2
Wikipedia pathwaysCALB2
Orthology - Evolution
OrthoDB794
GeneTree (enSembl)ENSG00000172137
Phylogenetic Trees/Animal Genes : TreeFamCALB2
HOVERGENP22676
HOGENOMP22676
Homologs : HomoloGeneCALB2
Homology/Alignments : Family Browser (UCSC)CALB2
Gene fusions - Rearrangements
Fusion : MitelmanCYB5B/CALB2 [16q22.1/16q22.2]  [t(16;16)(q22;q22)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCALB2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CALB2
dbVarCALB2
ClinVarCALB2
1000_GenomesCALB2 
Exome Variant ServerCALB2
ExAC (Exome Aggregation Consortium)CALB2 (select the gene name)
Genetic variants : HAPMAP794
Genomic Variants (DGV)CALB2 [DGVbeta]
DECIPHERCALB2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCALB2 
Mutations
ICGC Data PortalCALB2 
TCGA Data PortalCALB2 
Broad Tumor PortalCALB2
OASIS PortalCALB2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCALB2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCALB2
LOVD (Leiden Open Variation Database)Whole genome dataseTs
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CALB2
DgiDB (Drug Gene Interaction Database)CALB2
DoCM (Curated mutations)CALB2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CALB2 (select a term)
intoGenCALB2
Cancer3DCALB2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM114051   
Orphanet
MedgenCALB2
Genetic Testing Registry CALB2
NextProtP22676 [Medical]
TSGene794
GENETestsCALB2
Target ValidationCALB2
Huge Navigator CALB2 [HugePedia]
snp3D : Map Gene to Disease794
BioCentury BCIQCALB2
ClinGenCALB2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD794
Chemical/Pharm GKB GenePA26027
Clinical trialCALB2
Miscellaneous
canSAR (ICR)CALB2 (select the gene name)
Probes
Litterature
PubMed81 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCALB2
EVEXCALB2
GoPubMedCALB2
iHOPCALB2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:48:36 CEST 2017

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