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CALCB (calcitonin related polypeptide beta)

Identity

Alias_namesCALC2
calcitonin 2
Alias_symbol (synonym)FLJ30166
CGRP-II
Other aliasCGRP2
HGNC (Hugo) CALCB
LocusID (NCBI) 797
Atlas_Id 56135
Location 11p15.2  [Link to chromosome band 11p15]
Location_base_pair Starts at 15095146 and ends at 15100177 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CALCB   1438
Cards
Entrez_Gene (NCBI)CALCB  797  calcitonin related polypeptide beta
AliasesCALC2; CGRP-II; CGRP2
GeneCards (Weizmann)CALCB
Ensembl hg19 (Hinxton)ENSG00000175868 [Gene_View]  chr11:15095146-15100177 [Contig_View]  CALCB [Vega]
Ensembl hg38 (Hinxton)ENSG00000175868 [Gene_View]  chr11:15095146-15100177 [Contig_View]  CALCB [Vega]
ICGC DataPortalENSG00000175868
TCGA cBioPortalCALCB
AceView (NCBI)CALCB
Genatlas (Paris)CALCB
WikiGenes797
SOURCE (Princeton)CALCB
Genetics Home Reference (NIH)CALCB
Genomic and cartography
GoldenPath hg19 (UCSC)CALCB  -     chr11:15095146-15100177 +  11p15.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CALCB  -     11p15.2   [Description]    (hg38-Dec_2013)
EnsemblCALCB - 11p15.2 [CytoView hg19]  CALCB - 11p15.2 [CytoView hg38]
Mapping of homologs : NCBICALCB [Mapview hg19]  CALCB [Mapview hg38]
OMIM114160   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_000728
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CALCB
Cluster EST : UnigeneHs.534305 [ NCBI ]
CGAP (NCI)Hs.534305
Alternative Splicing GalleryENSG00000175868
Gene ExpressionCALCB [ NCBI-GEO ]   CALCB [ EBI - ARRAY_EXPRESS ]   CALCB [ SEEK ]   CALCB [ MEM ]
Gene Expression Viewer (FireBrowse)CALCB [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)797
GTEX Portal (Tissue expression)CALCB
Protein : pattern, domain, 3D structure
UniProt/SwissProtP10092   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP10092  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP10092
Splice isoforms : SwissVarP10092
PhosPhoSitePlusP10092
Domaine pattern : Prosite (Expaxy)CALCITONIN (PS00258)   
Domains : Interpro (EBI)Calcitonin-like    Calcitonin/adrenomedullin    Calcitonin_CS    Calcitonin_gene-rel_peptide    Calcitonin_peptide-like   
Domain families : Pfam (Sanger)Calc_CGRP_IAPP (PF00214)   
Domain families : Pfam (NCBI)pfam00214   
Domain families : Smart (EMBL)CALCITONIN (SM00113)  
Conserved Domain (NCBI)CALCB
DMDM Disease mutations797
Blocks (Seattle)CALCB
SuperfamilyP10092
Human Protein AtlasENSG00000175868
Peptide AtlasP10092
HPRD11742
IPIIPI00018941   IPI00978028   
Protein Interaction databases
DIP (DOE-UCLA)P10092
IntAct (EBI)P10092
FunCoupENSG00000175868
BioGRIDCALCB
STRING (EMBL)CALCB
ZODIACCALCB
Ontologies - Pathways
QuickGOP10092
Ontology : AmiGOneuropeptide hormone activity  extracellular region  cell  cellular calcium ion homeostasis  signal transduction  
Ontology : EGO-EBIneuropeptide hormone activity  extracellular region  cell  cellular calcium ion homeostasis  signal transduction  
NDEx NetworkCALCB
Atlas of Cancer Signalling NetworkCALCB
Wikipedia pathwaysCALCB
Orthology - Evolution
OrthoDB797
GeneTree (enSembl)ENSG00000175868
Phylogenetic Trees/Animal Genes : TreeFamCALCB
HOVERGENP10092
HOGENOMP10092
Homologs : HomoloGeneCALCB
Homology/Alignments : Family Browser (UCSC)CALCB
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCALCB [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CALCB
dbVarCALCB
ClinVarCALCB
1000_GenomesCALCB 
Exome Variant ServerCALCB
ExAC (Exome Aggregation Consortium)CALCB (select the gene name)
Genetic variants : HAPMAP797
Genomic Variants (DGV)CALCB [DGVbeta]
DECIPHER (Syndromes)11:15095146-15100177  ENSG00000175868
CONAN: Copy Number AnalysisCALCB 
Mutations
ICGC Data PortalCALCB 
TCGA Data PortalCALCB 
Broad Tumor PortalCALCB
OASIS PortalCALCB [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCALCB  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCALCB
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CALCB
DgiDB (Drug Gene Interaction Database)CALCB
DoCM (Curated mutations)CALCB (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CALCB (select a term)
intoGenCALCB
Cancer3DCALCB(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM114160   
Orphanet
MedgenCALCB
Genetic Testing Registry CALCB
NextProtP10092 [Medical]
TSGene797
GENETestsCALCB
Huge Navigator CALCB [HugePedia]
snp3D : Map Gene to Disease797
BioCentury BCIQCALCB
ClinGenCALCB
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD797
Chemical/Pharm GKB GenePA26030
Clinical trialCALCB
Miscellaneous
canSAR (ICR)CALCB (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCALCB
EVEXCALCB
GoPubMedCALCB
iHOPCALCB
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:58:31 CET 2017

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