Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CALCOCO1 (calcium binding and coiled-coil domain 1)

Identity

Alias_symbol (synonym)KIAA1536
calphoglin
Cocoa
Other aliasPP13275
HGNC (Hugo) CALCOCO1
LocusID (NCBI) 57658
Atlas_Id 54189
Location 12q13.13  [Link to chromosome band 12q13]
Location_base_pair Starts at 53711119 and ends at 53727523 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CALCOCO1 (12q13.13) / TK1 (17q25.3)MBNL1 (3q25.1) / CALCOCO1 (12q13.13)SLC16A7 (12q14.1) / CALCOCO1 (12q13.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CALCOCO1   29306
Cards
Entrez_Gene (NCBI)CALCOCO1  57658  calcium binding and coiled-coil domain 1
AliasesCocoa; PP13275; calphoglin
GeneCards (Weizmann)CALCOCO1
Ensembl hg19 (Hinxton)ENSG00000012822 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000012822 [Gene_View]  chr12:53711119-53727523 [Contig_View]  CALCOCO1 [Vega]
ICGC DataPortalENSG00000012822
TCGA cBioPortalCALCOCO1
AceView (NCBI)CALCOCO1
Genatlas (Paris)CALCOCO1
WikiGenes57658
SOURCE (Princeton)CALCOCO1
Genetics Home Reference (NIH)CALCOCO1
Genomic and cartography
GoldenPath hg38 (UCSC)CALCOCO1  -     chr12:53711119-53727523 -  12q13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CALCOCO1  -     12q13.13   [Description]    (hg19-Feb_2009)
EnsemblCALCOCO1 - 12q13.13 [CytoView hg19]  CALCOCO1 - 12q13.13 [CytoView hg38]
Mapping of homologs : NCBICALCOCO1 [Mapview hg19]  CALCOCO1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB040969 AF370415 AK027881 AK092788 AK122773
RefSeq transcript (Entrez)NM_001143682 NM_020898
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CALCOCO1
Cluster EST : UnigeneHs.156667 [ NCBI ]
CGAP (NCI)Hs.156667
Alternative Splicing GalleryENSG00000012822
Gene ExpressionCALCOCO1 [ NCBI-GEO ]   CALCOCO1 [ EBI - ARRAY_EXPRESS ]   CALCOCO1 [ SEEK ]   CALCOCO1 [ MEM ]
Gene Expression Viewer (FireBrowse)CALCOCO1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57658
GTEX Portal (Tissue expression)CALCOCO1
Human Protein AtlasENSG00000012822-CALCOCO1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P1Z2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P1Z2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P1Z2
Splice isoforms : SwissVarQ9P1Z2
PhosPhoSitePlusQ9P1Z2
Domains : Interpro (EBI)CALCOCO1-like   
Domain families : Pfam (Sanger)CALCOCO1 (PF07888)   
Domain families : Pfam (NCBI)pfam07888   
Conserved Domain (NCBI)CALCOCO1
DMDM Disease mutations57658
Blocks (Seattle)CALCOCO1
SuperfamilyQ9P1Z2
Human Protein Atlas [tissue]ENSG00000012822-CALCOCO1 [tissue]
Peptide AtlasQ9P1Z2
HPRD13868
IPI###############################################################################################################################################################################################################################################################   
Protein Interaction databases
DIP (DOE-UCLA)Q9P1Z2
IntAct (EBI)Q9P1Z2
FunCoupENSG00000012822
BioGRIDCALCOCO1
STRING (EMBL)CALCOCO1
ZODIACCALCOCO1
Ontologies - Pathways
QuickGOQ9P1Z2
Ontology : AmiGOnuclear chromatin  core promoter binding  chromatin binding  transcription cofactor activity  transcription coactivator activity  transcription coactivator activity  protein binding  nucleus  cytosol  transcription, DNA-templated  signal transduction  beta-catenin binding  protein C-terminus binding  positive regulation of gene expression  Wnt signaling pathway  ligand-dependent nuclear receptor transcription coactivator activity  intracellular steroid hormone receptor signaling pathway  intracellular membrane-bounded organelle  sequence-specific DNA binding  transcription regulatory region DNA binding  positive regulation of transcription, DNA-templated  positive regulation of transcription from RNA polymerase II promoter  armadillo repeat domain binding  
Ontology : EGO-EBInuclear chromatin  core promoter binding  chromatin binding  transcription cofactor activity  transcription coactivator activity  transcription coactivator activity  protein binding  nucleus  cytosol  transcription, DNA-templated  signal transduction  beta-catenin binding  protein C-terminus binding  positive regulation of gene expression  Wnt signaling pathway  ligand-dependent nuclear receptor transcription coactivator activity  intracellular steroid hormone receptor signaling pathway  intracellular membrane-bounded organelle  sequence-specific DNA binding  transcription regulatory region DNA binding  positive regulation of transcription, DNA-templated  positive regulation of transcription from RNA polymerase II promoter  armadillo repeat domain binding  
NDEx NetworkCALCOCO1
Atlas of Cancer Signalling NetworkCALCOCO1
Wikipedia pathwaysCALCOCO1
Orthology - Evolution
OrthoDB57658
GeneTree (enSembl)ENSG00000012822
Phylogenetic Trees/Animal Genes : TreeFamCALCOCO1
HOVERGENQ9P1Z2
HOGENOMQ9P1Z2
Homologs : HomoloGeneCALCOCO1
Homology/Alignments : Family Browser (UCSC)CALCOCO1
Gene fusions - Rearrangements
Fusion : MitelmanSLC16A7/CALCOCO1 [12q14.1/12q13.13]  [t(12;12)(q13;q14)]  
Fusion: Tumor Portal CALCOCO1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCALCOCO1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CALCOCO1
dbVarCALCOCO1
ClinVarCALCOCO1
1000_GenomesCALCOCO1 
Exome Variant ServerCALCOCO1
ExAC (Exome Aggregation Consortium)ENSG00000012822
GNOMAD BrowserENSG00000012822
Genetic variants : HAPMAP57658
Genomic Variants (DGV)CALCOCO1 [DGVbeta]
DECIPHERCALCOCO1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCALCOCO1 
Mutations
ICGC Data PortalCALCOCO1 
TCGA Data PortalCALCOCO1 
Broad Tumor PortalCALCOCO1
OASIS PortalCALCOCO1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCALCOCO1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCALCOCO1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CALCOCO1
DgiDB (Drug Gene Interaction Database)CALCOCO1
DoCM (Curated mutations)CALCOCO1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CALCOCO1 (select a term)
intoGenCALCOCO1
Cancer3DCALCOCO1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCALCOCO1
Genetic Testing Registry CALCOCO1
NextProtQ9P1Z2 [Medical]
TSGene57658
GENETestsCALCOCO1
Target ValidationCALCOCO1
Huge Navigator CALCOCO1 [HugePedia]
snp3D : Map Gene to Disease57658
BioCentury BCIQCALCOCO1
ClinGenCALCOCO1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57658
Chemical/Pharm GKB GenePA128394699
Clinical trialCALCOCO1
Miscellaneous
canSAR (ICR)CALCOCO1 (select the gene name)
Probes
Litterature
PubMed35 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCALCOCO1
EVEXCALCOCO1
GoPubMedCALCOCO1
iHOPCALCOCO1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:42:54 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.