Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CALCOCO2 (calcium binding and coiled-coil domain 2)

Identity

Alias (NCBI)NDP52
HGNC (Hugo) CALCOCO2
HGNC Alias symbMGC17318
NDP52
LocusID (NCBI) 10241
Atlas_Id 61386
Location 17q21.32  [Link to chromosome band 17q21]
Location_base_pair Starts at 48831035 and ends at 48865245 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ALDH18A1 (10q24.1) / CALCOCO2 (17q21.32)LRRFIP1 (2q37.3) / CALCOCO2 (17q21.32)PCTP (17q22) / CALCOCO2 (17q21.32)
RNF169 (11q13.4) / CALCOCO2 (17q21.32)SKAP1 (17q21.32) / CALCOCO2 (17q21.32)SLC12A8 (3q21.2) / CALCOCO2 (17q21.32)
PCTP CALCOCO2RNF169 CALCOCO2SKAP1 CALCOCO2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)CALCOCO2   29912
Cards
Entrez_Gene (NCBI)CALCOCO2    calcium binding and coiled-coil domain 2
AliasesNDP52
GeneCards (Weizmann)CALCOCO2
Ensembl hg19 (Hinxton)ENSG00000136436 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000136436 [Gene_View]  ENSG00000136436 [Sequence]  chr17:48831035-48865245 [Contig_View]  CALCOCO2 [Vega]
ICGC DataPortalENSG00000136436
TCGA cBioPortalCALCOCO2
AceView (NCBI)CALCOCO2
Genatlas (Paris)CALCOCO2
SOURCE (Princeton)CALCOCO2
Genetics Home Reference (NIH)CALCOCO2
Genomic and cartography
GoldenPath hg38 (UCSC)CALCOCO2  -     chr17:48831035-48865245 +  17q21.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CALCOCO2  -     17q21.32   [Description]    (hg19-Feb_2009)
GoldenPathCALCOCO2 - 17q21.32 [CytoView hg19]  CALCOCO2 - 17q21.32 [CytoView hg38]
ImmunoBaseENSG00000136436
Genome Data Viewer NCBICALCOCO2 [Mapview hg19]  
OMIM604587   
Gene and transcription
Genbank (Entrez)AF085965 AK222666 AK223227 AK293137 AK293329
RefSeq transcript (Entrez)NM_001261390 NM_001261391 NM_001261393 NM_001261395 NM_005831
Consensus coding sequences : CCDS (NCBI)CALCOCO2
Gene ExpressionCALCOCO2 [ NCBI-GEO ]   CALCOCO2 [ EBI - ARRAY_EXPRESS ]   CALCOCO2 [ SEEK ]   CALCOCO2 [ MEM ]
Gene Expression Viewer (FireBrowse)CALCOCO2 [ Firebrowse - Broad ]
GenevisibleExpression of CALCOCO2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10241
GTEX Portal (Tissue expression)CALCOCO2
Human Protein AtlasENSG00000136436-CALCOCO2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CALCOCO2
Human Protein Atlas [tissue]ENSG00000136436-CALCOCO2 [tissue]
HPRD06846
Protein Interaction databases
BioGRIDCALCOCO2
STRING (EMBL)CALCOCO2
ZODIACCALCOCO2
Ontologies - Pathways
Litterature
PubMed85 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCALCOCO2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:44:42 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.