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CALCR (calcitonin receptor)

Identity

Other namesCRT
CT-R
CTR
CTR1
HGNC (Hugo) CALCR
LocusID (NCBI) 799
Location 7q21.3
Location_base_pair Starts at 93053799 and ends at 93204042 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CALCR   1440
Entrez_Gene (NCBI)CALCR  799  calcitonin receptor
Cards
GeneCards (Weizmann)CALCR
Ensembl (Hinxton)ENSG00000004948 [Gene_View]  chr7:93053799-93204042 [Contig_View]  CALCR [Vega]
AceView (NCBI)CALCR
Genatlas (Paris)CALCR
SOURCE (Stanford)NM_001164737 NM_001164738 NM_001742
Genomic and cartography
GoldenPath (UCSC)CALCR  -  7q21.3   chr7:93053799-93204042 -  7q21.3   [Description]    (hg19-Feb_2009)
EnsemblCALCR - 7q21.3 [CytoView]
Mapping of homologs : NCBICALCR [Mapview]
OMIM114131   166710   
Gene and transcription
Genbank (Entrez)AB022177 AB022178 AJ831406 AJ831407 AK313996
RefSeq transcript (SRS)NM_001164737 NM_001164738 NM_001742
RefSeq transcript (Entrez)NM_001164737 NM_001164738 NM_001742
RefSeq genomic (SRS)AC_000068 AC_000139 NC_000007 NC_018918 NG_013005 NT_007933 NT_079595 NW_001839064 NW_004078032
RefSeq genomic (Entrez)AC_000068 AC_000139 NC_000007 NC_018918 NG_013005 NT_007933 NT_079595 NW_001839064 NW_004078032
Consensus coding sequences : CCDS (NCBI)CALCR
Cluster EST : UnigeneHs.489127 [ SRS ] Hs.489127 [ NCBI ]
CGAP (NCI)Hs.489127
Alternative Splicing : Fast-db (Paris)GSHG0028357
Alternative Splicing GalleryENSG00000004948
Gene ExpressionCALCR [ NCBI-GEO ]   CALCR [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP30988 (SRS) P30988 (Uniprot)
NextProtP30988
With graphics : InterProP30988
Splice isoforms : SwissVarP30988(Swissvar)
Domaine pattern : Prosite (SRS)G_PROTEIN_RECEP_F2_1 (PS00649)    G_PROTEIN_RECEP_F2_2 (PS00650)    G_PROTEIN_RECEP_F2_3 (PS50227)    G_PROTEIN_RECEP_F2_4 (PS50261)   
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F2_1 (PS00649)    G_PROTEIN_RECEP_F2_2 (PS00650)    G_PROTEIN_RECEP_F2_3 (PS50227)    G_PROTEIN_RECEP_F2_4 (PS50261)   
Domains : Interpro (SRS)GCPR_2_calcitonin_rcpt_fam    GPCR_2-like    GPCR_2_calcitonin_rcpt    GPCR_2_extracellular_dom    GPCR_2_secretin-like    GPCR_2_secretin-like_CS   
Domains : Interpro (EBI)GCPR_2_calcitonin_rcpt_fam    GPCR_2-like    GPCR_2_calcitonin_rcpt    GPCR_2_extracellular_dom    GPCR_2_secretin-like    GPCR_2_secretin-like_CS   
Related proteins : CluSTrP30988
Domain families : Pfam (SRS)7tm_2 (PF00002)    HRM (PF02793)   
Domain families : Pfam (Sanger)7tm_2 (PF00002)    HRM (PF02793)   
Domain families : Pfam (NCBI)pfam00002    pfam02793   
Domain families : Smart (EMBL)HormR (SM00008)  
DMDM799
Blocks (Seattle)P30988
Human Protein AtlasENSG00000004948
HPRD00239
IPIIPI00187004   IPI00419304   IPI01015083   IPI00925992   IPI00925772   
Protein Interaction databases
DIP (DOE-UCLA)P30988
IntAct (EBI)P30988
FunCoupENSG00000004948
REACTOMECALCR
Protein Interaction Database799
BioGRIDCALCR
InParanoidP30988
Interologous Interaction database P30988
IntegromeDBCALCR
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)CALCR
SNP (GeneSNP Utah)CALCR
SNP : HGBaseCALCR
Genetic variants : HAPMAPCALCR
Somatic Mutations in Cancer : COSMICCALCR 
CONAN: Copy Number AnalysisCALCR 
Mutations and Diseases : HGMDCALCR
OMIM114131    166710   
GENETests114131    166710   
Disease Genetic AssociationCALCR
Huge Navigator CALCR [HugePedia]  CALCR [HugeCancerGEM]
Genomic VariantsCALCR  CALCR [DGVbeta]
snp3D : Map Gene to Disease799
General knowledge
Homologs : HomoloGeneCALCR
Homology/Alignments : Family Browser (UCSC)CALCR
Phylogenetic Trees/Animal Genes : TreeFamCALCR
Chemical/Protein Interactions : CTD799
Chemical/Pharm GKB GenePA26032
Clinical trialCALCR
Cancer Resource (Charite)ENSG00000004948
Ontology : AmiGOreceptor activity  calcitonin receptor activity  calcitonin receptor activity  protein binding  plasma membrane  integral to plasma membrane  adenylate cyclase-activating G-protein coupled receptor signaling pathway  adenylate cyclase-activating G-protein coupled receptor signaling pathway  activation of phospholipase C activity  elevation of cytosolic calcium ion concentration  protein transporter activity  protein transport  positive regulation of cAMP biosynthetic process  receptor internalization  calcitonin binding  calcitonin binding  positive regulation of adenylate cyclase activity  response to glucocorticoid stimulus  protein localization to plasma membrane  
Ontology : EGO-EBIreceptor activity  calcitonin receptor activity  calcitonin receptor activity  protein binding  plasma membrane  integral to plasma membrane  adenylate cyclase-activating G-protein coupled receptor signaling pathway  adenylate cyclase-activating G-protein coupled receptor signaling pathway  activation of phospholipase C activity  elevation of cytosolic calcium ion concentration  protein transporter activity  protein transport  positive regulation of cAMP biosynthetic process  receptor internalization  calcitonin binding  calcitonin binding  positive regulation of adenylate cyclase activity  response to glucocorticoid stimulus  protein localization to plasma membrane  
Pathways : KEGGNeuroactive ligand-receptor interaction
Other databases
Probes
Litterature
PubMed82 Pubmed reference(s) in Entrez
PubGeneCALCR
iHOPCALCR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:33:44 CEST 2013
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