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CALD1 (caldesmon 1)

Identity

Alias (NCBI)CDM
H-CAD
HCAD
L-CAD
LCAD
NAG22
HGNC (Hugo) CALD1
HGNC Alias symbCDM
H-CAD
L-CAD
LocusID (NCBI) 800
Atlas_Id 46343
Location 7q33  [Link to chromosome band 7q33]
Location_base_pair Starts at 134779634 and ends at 134970729 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ANKRD52 (12q13.3) / CALD1 (7q33)CALD1 (7q33) / ADGRL3 (4q13.1)CALD1 (7q33) / AKR1B15 (7q33)
CALD1 (7q33) / BRWD1 (21q22.2)CALD1 (7q33) / CALD1 (7q33)CALD1 (7q33) / CGN (1q21.3)
CALD1 (7q33) / DONSON (21q22.11)CALD1 (7q33) / HMGN2 (1p36.11)CALD1 (7q33) / LRGUK (7q33)
CALD1 (7q33) / SREK1IP1 (5q12.3)CALD1 (7q33) / TM9SF4 (20q11.21)CSH1 (17q23.3) / CALD1 (7q33)
HSP90AA1 (14q32.31) / CALD1 (7q33)KIAA2026 (9p24.1) / CALD1 (7q33)LMNB1 (5q23.2) / CALD1 (7q33)
RPS5 (19q13.43) / CALD1 (7q33)TM9SF4 (20q11.21) / CALD1 (7q33)ZFAS1 (20q13.13) / CALD1 (7q33)
CALD1 7q33 / AKR1B15 7q33CALD1 7q33 / CGN 1q21.3CALD1 7q33 / LRGUK 7q33
RPS5 19q13.43 / CALD1 7q33

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)CALD1   1441
Cards
Entrez_Gene (NCBI)CALD1    caldesmon 1
AliasesCDM; H-CAD; HCAD; L-CAD; 
LCAD; NAG22
GeneCards (Weizmann)CALD1
Ensembl hg19 (Hinxton)ENSG00000122786 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000122786 [Gene_View]  ENSG00000122786 [Sequence]  chr7:134779634-134970729 [Contig_View]  CALD1 [Vega]
ICGC DataPortalENSG00000122786
TCGA cBioPortalCALD1
AceView (NCBI)CALD1
Genatlas (Paris)CALD1
SOURCE (Princeton)CALD1
Genetics Home Reference (NIH)CALD1
Genomic and cartography
GoldenPath hg38 (UCSC)CALD1  -     chr7:134779634-134970729 +  7q33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CALD1  -     7q33   [Description]    (hg19-Feb_2009)
GoldenPathCALD1 - 7q33 [CytoView hg19]  CALD1 - 7q33 [CytoView hg38]
ImmunoBaseENSG00000122786
Genome Data Viewer NCBICALD1 [Mapview hg19]  
OMIM114213   
Gene and transcription
Genbank (Entrez)AB062484 AF247820 AF315788 AI926727 AJ223812
RefSeq transcript (Entrez)NM_004342 NM_033138 NM_033139 NM_033140 NM_033157
Consensus coding sequences : CCDS (NCBI)CALD1
Gene ExpressionCALD1 [ NCBI-GEO ]   CALD1 [ EBI - ARRAY_EXPRESS ]   CALD1 [ SEEK ]   CALD1 [ MEM ]
Gene Expression Viewer (FireBrowse)CALD1 [ Firebrowse - Broad ]
GenevisibleExpression of CALD1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)800
GTEX Portal (Tissue expression)CALD1
Human Protein AtlasENSG00000122786-CALD1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ05682   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ05682  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ05682
PhosPhoSitePlusQ05682
Domains : Interpro (EBI)Caldesmon    Caldesmon_LSP   
Domain families : Pfam (Sanger)Caldesmon (PF02029)   
Domain families : Pfam (NCBI)pfam02029   
Conserved Domain (NCBI)CALD1
SuperfamilyQ05682
AlphaFold pdb e-kbQ05682   
Human Protein Atlas [tissue]ENSG00000122786-CALD1 [tissue]
HPRD00251
Protein Interaction databases
DIP (DOE-UCLA)Q05682
IntAct (EBI)Q05682
BioGRIDCALD1
STRING (EMBL)CALD1
ZODIACCALD1
Ontologies - Pathways
QuickGOQ05682
Ontology : AmiGOangiogenesis  actin binding  protein binding  calmodulin binding  tropomyosin binding  cytosol  cytoskeleton  plasma membrane  muscle contraction  actin cytoskeleton  actin cytoskeleton  myosin binding  myofibril  actin cap  cadherin binding  actin filament bundle assembly  
Ontology : EGO-EBIangiogenesis  actin binding  protein binding  calmodulin binding  tropomyosin binding  cytosol  cytoskeleton  plasma membrane  muscle contraction  actin cytoskeleton  actin cytoskeleton  myosin binding  myofibril  actin cap  cadherin binding  actin filament bundle assembly  
Pathways : KEGGVascular smooth muscle contraction   
NDEx NetworkCALD1
Atlas of Cancer Signalling NetworkCALD1
Wikipedia pathwaysCALD1
Orthology - Evolution
OrthoDB800
GeneTree (enSembl)ENSG00000122786
Phylogenetic Trees/Animal Genes : TreeFamCALD1
Homologs : HomoloGeneCALD1
Homology/Alignments : Family Browser (UCSC)CALD1
Gene fusions - Rearrangements
Fusion : MitelmanCALD1/CGN [7q33/1q21.3]  
Fusion : MitelmanRPS5/CALD1 [19q13.43/7q33]  
Fusion : QuiverCALD1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCALD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CALD1
dbVarCALD1
ClinVarCALD1
MonarchCALD1
1000_GenomesCALD1 
Exome Variant ServerCALD1
GNOMAD BrowserENSG00000122786
Varsome BrowserCALD1
ACMGCALD1 variants
VarityQ05682
Genomic Variants (DGV)CALD1 [DGVbeta]
DECIPHERCALD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCALD1 
Mutations
ICGC Data PortalCALD1 
TCGA Data PortalCALD1 
Broad Tumor PortalCALD1
OASIS PortalCALD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCALD1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCALD1
Mutations and Diseases : HGMDCALD1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaCALD1
DgiDB (Drug Gene Interaction Database)CALD1
DoCM (Curated mutations)CALD1
CIViC (Clinical Interpretations of Variants in Cancer)CALD1
Cancer3DCALD1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM114213   
Orphanet
DisGeNETCALD1
MedgenCALD1
Genetic Testing Registry CALD1
NextProtQ05682 [Medical]
GENETestsCALD1
Target ValidationCALD1
Huge Navigator CALD1 [HugePedia]
ClinGenCALD1
Clinical trials, drugs, therapy
MyCancerGenomeCALD1
Protein Interactions : CTDCALD1
Pharm GKB GenePA26034
PharosQ05682
Clinical trialCALD1
Miscellaneous
canSAR (ICR)CALD1
HarmonizomeCALD1
DataMed IndexCALD1
Probes
Litterature
PubMed100 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCALD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:02:04 CEST 2021

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