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CALD1 (caldesmon 1)

Identity

Alias_symbol (synonym)CDM
H-CAD
L-CAD
Other aliasHCAD
LCAD
NAG22
HGNC (Hugo) CALD1
LocusID (NCBI) 800
Atlas_Id 46343
Location 7q33  [Link to chromosome band 7q33]
Location_base_pair Starts at 134779413 and ends at 134970729 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ANKRD52 (12q13.3) / CALD1 (7q33)CALD1 (7q33) / ADGRL3 (4q13.1)CALD1 (7q33) / AKR1B15 (7q33)
CALD1 (7q33) / BRWD1 (21q22.2)CALD1 (7q33) / CALD1 (7q33)CALD1 (7q33) / CGN (1q21.3)
CALD1 (7q33) / DONSON (21q22.11)CALD1 (7q33) / HMGN2 (1p36.11)CALD1 (7q33) / LRGUK (7q33)
CALD1 (7q33) / SREK1IP1 (5q12.3)CALD1 (7q33) / TM9SF4 (20q11.21)CSH1 (17q23.3) / CALD1 (7q33)
HSP90AA1 (14q32.31) / CALD1 (7q33)KIAA2026 (9p24.1) / CALD1 (7q33)LMNB1 (5q23.2) / CALD1 (7q33)
RPS5 (19q13.43) / CALD1 (7q33)TM9SF4 (20q11.21) / CALD1 (7q33)ZFAS1 (20q13.13) / CALD1 (7q33)
CALD1 7q33 / AKR1B15 7q33CALD1 7q33 / CGN 1q21.3CALD1 7q33 / LRGUK 7q33
RPS5 19q13.43 / CALD1 7q33

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CALD1   1441
Cards
Entrez_Gene (NCBI)CALD1  800  caldesmon 1
AliasesCDM; H-CAD; HCAD; L-CAD; 
LCAD; NAG22
GeneCards (Weizmann)CALD1
Ensembl hg19 (Hinxton)ENSG00000122786 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000122786 [Gene_View]  chr7:134779413-134970729 [Contig_View]  CALD1 [Vega]
ICGC DataPortalENSG00000122786
TCGA cBioPortalCALD1
AceView (NCBI)CALD1
Genatlas (Paris)CALD1
WikiGenes800
SOURCE (Princeton)CALD1
Genetics Home Reference (NIH)CALD1
Genomic and cartography
GoldenPath hg38 (UCSC)CALD1  -     chr7:134779413-134970729 +  7q33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CALD1  -     7q33   [Description]    (hg19-Feb_2009)
EnsemblCALD1 - 7q33 [CytoView hg19]  CALD1 - 7q33 [CytoView hg38]
Mapping of homologs : NCBICALD1 [Mapview hg19]  CALD1 [Mapview hg38]
OMIM114213   
Gene and transcription
Genbank (Entrez)###############################################################################################################################################################################################################################################################
RefSeq transcript (Entrez)NM_004342 NM_033138 NM_033139 NM_033140 NM_033157
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CALD1
Cluster EST : UnigeneHs.490203 [ NCBI ]
CGAP (NCI)Hs.490203
Alternative Splicing GalleryENSG00000122786
Gene ExpressionCALD1 [ NCBI-GEO ]   CALD1 [ EBI - ARRAY_EXPRESS ]   CALD1 [ SEEK ]   CALD1 [ MEM ]
Gene Expression Viewer (FireBrowse)CALD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)800
GTEX Portal (Tissue expression)CALD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ05682   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ05682  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ05682
Splice isoforms : SwissVarQ05682
PhosPhoSitePlusQ05682
Domains : Interpro (EBI)Caldesmon    Caldesmon_LSP   
Domain families : Pfam (Sanger)Caldesmon (PF02029)   
Domain families : Pfam (NCBI)pfam02029   
Conserved Domain (NCBI)CALD1
DMDM Disease mutations800
Blocks (Seattle)CALD1
SuperfamilyQ05682
Human Protein AtlasENSG00000122786
Peptide AtlasQ05682
HPRD00251
IPIIPI00014516   IPI00218694   IPI00218695   IPI01013595   IPI00333771   IPI00218696   IPI00807611   IPI00386453   IPI00925125   IPI00925322   IPI00816770   IPI00926274   IPI00926955   IPI00926763   IPI01014398   
Protein Interaction databases
DIP (DOE-UCLA)Q05682
IntAct (EBI)Q05682
FunCoupENSG00000122786
BioGRIDCALD1
STRING (EMBL)CALD1
ZODIACCALD1
Ontologies - Pathways
QuickGOQ05682
Ontology : AmiGOactin binding  protein binding  calmodulin binding  tropomyosin binding  cytosol  cytoskeleton  plasma membrane  movement of cell or subcellular component  muscle contraction  actin cytoskeleton  myosin binding  myofibril  actin cap  intracellular membrane-bounded organelle  cadherin binding  
Ontology : EGO-EBIactin binding  protein binding  calmodulin binding  tropomyosin binding  cytosol  cytoskeleton  plasma membrane  movement of cell or subcellular component  muscle contraction  actin cytoskeleton  myosin binding  myofibril  actin cap  intracellular membrane-bounded organelle  cadherin binding  
Pathways : KEGGVascular smooth muscle contraction   
NDEx NetworkCALD1
Atlas of Cancer Signalling NetworkCALD1
Wikipedia pathwaysCALD1
Orthology - Evolution
OrthoDB800
GeneTree (enSembl)ENSG00000122786
Phylogenetic Trees/Animal Genes : TreeFamCALD1
HOVERGENQ05682
HOGENOMQ05682
Homologs : HomoloGeneCALD1
Homology/Alignments : Family Browser (UCSC)CALD1
Gene fusions - Rearrangements
Fusion : MitelmanCALD1/CGN [7q33/1q21.3]  
Fusion : MitelmanRPS5/CALD1 [19q13.43/7q33]  [t(7;19)(q33;q13)]  
Fusion: TCGACALD1 7q33 AKR1B15 7q33 HNSC
Fusion: TCGACALD1 7q33 CGN 1q21.3 KIRC
Fusion: TCGACALD1 7q33 LRGUK 7q33 BRCA
Fusion: TCGARPS5 19q13.43 CALD1 7q33 PRAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCALD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CALD1
dbVarCALD1
ClinVarCALD1
1000_GenomesCALD1 
Exome Variant ServerCALD1
ExAC (Exome Aggregation Consortium)CALD1 (select the gene name)
Genetic variants : HAPMAP800
Genomic Variants (DGV)CALD1 [DGVbeta]
DECIPHERCALD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCALD1 
Mutations
ICGC Data PortalCALD1 
TCGA Data PortalCALD1 
Broad Tumor PortalCALD1
OASIS PortalCALD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCALD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCALD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CALD1
DgiDB (Drug Gene Interaction Database)CALD1
DoCM (Curated mutations)CALD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CALD1 (select a term)
intoGenCALD1
Cancer3DCALD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM114213   
Orphanet
MedgenCALD1
Genetic Testing Registry CALD1
NextProtQ05682 [Medical]
TSGene800
GENETestsCALD1
Huge Navigator CALD1 [HugePedia]
snp3D : Map Gene to Disease800
BioCentury BCIQCALD1
ClinGenCALD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD800
Chemical/Pharm GKB GenePA26034
Clinical trialCALD1
Miscellaneous
canSAR (ICR)CALD1 (select the gene name)
Probes
Litterature
PubMed77 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCALD1
EVEXCALD1
GoPubMedCALD1
iHOPCALD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:08:42 CEST 2017

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