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CALHM1 (calcium homeostasis modulator 1)

Identity

Alias (NCBI)FAM26C
HGNC (Hugo) CALHM1
HGNC Previous nameFAM26C
HGNC Previous namefamily with sequence similarity 26, member C
LocusID (NCBI) 255022
Atlas_Id 61387
Location 10q24.33  [Link to chromosome band 10q24]
Location_base_pair Starts at 103453240 and ends at 103458900 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)CALHM1   23494
Cards
Entrez_Gene (NCBI)CALHM1    calcium homeostasis modulator 1
AliasesFAM26C
GeneCards (Weizmann)CALHM1
Ensembl hg19 (Hinxton)ENSG00000185933 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185933 [Gene_View]  ENSG00000185933 [Sequence]  chr10:103453240-103458900 [Contig_View]  CALHM1 [Vega]
ICGC DataPortalENSG00000185933
TCGA cBioPortalCALHM1
AceView (NCBI)CALHM1
Genatlas (Paris)CALHM1
SOURCE (Princeton)CALHM1
Genetics Home Reference (NIH)CALHM1
Genomic and cartography
GoldenPath hg38 (UCSC)CALHM1  -     chr10:103453240-103458900 -  10q24.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CALHM1  -     10q24.33   [Description]    (hg19-Feb_2009)
GoldenPathCALHM1 - 10q24.33 [CytoView hg19]  CALHM1 - 10q24.33 [CytoView hg38]
ImmunoBaseENSG00000185933
Genome Data Viewer NCBICALHM1 [Mapview hg19]  
OMIM612234   
Gene and transcription
Genbank (Entrez)BC036193 BC036208
RefSeq transcript (Entrez)NM_001001412
Consensus coding sequences : CCDS (NCBI)CALHM1
Gene ExpressionCALHM1 [ NCBI-GEO ]   CALHM1 [ EBI - ARRAY_EXPRESS ]   CALHM1 [ SEEK ]   CALHM1 [ MEM ]
Gene Expression Viewer (FireBrowse)CALHM1 [ Firebrowse - Broad ]
GenevisibleExpression of CALHM1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)255022
GTEX Portal (Tissue expression)CALHM1
Human Protein AtlasENSG00000185933-CALHM1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IU99   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IU99  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IU99
PhosPhoSitePlusQ8IU99
Domains : Interpro (EBI)CALHM    CALHM1   
Domain families : Pfam (Sanger)Ca_hom_mod (PF14798)   
Domain families : Pfam (NCBI)pfam14798   
Conserved Domain (NCBI)CALHM1
SuperfamilyQ8IU99
AlphaFold pdb e-kbQ8IU99   
Human Protein Atlas [tissue]ENSG00000185933-CALHM1 [tissue]
HPRD16879
Protein Interaction databases
DIP (DOE-UCLA)Q8IU99
IntAct (EBI)Q8IU99
BioGRIDCALHM1
STRING (EMBL)CALHM1
ZODIACCALHM1
Ontologies - Pathways
QuickGOQ8IU99
Ontology : AmiGOcalcium activated cation channel activity  voltage-gated ion channel activity  voltage-gated calcium channel activity  cation channel activity  protein binding  endoplasmic reticulum membrane  integral component of plasma membrane  integral component of plasma membrane  cation transport  ATP transport  basolateral plasma membrane  regulation of ion transmembrane transport  identical protein binding  response to stimulus  sensory perception of bitter taste  sensory perception of sweet taste  sensory perception of umami taste  protein homooligomerization  protein heterooligomerization  calcium ion transmembrane transport  
Ontology : EGO-EBIcalcium activated cation channel activity  voltage-gated ion channel activity  voltage-gated calcium channel activity  cation channel activity  protein binding  endoplasmic reticulum membrane  integral component of plasma membrane  integral component of plasma membrane  cation transport  ATP transport  basolateral plasma membrane  regulation of ion transmembrane transport  identical protein binding  response to stimulus  sensory perception of bitter taste  sensory perception of sweet taste  sensory perception of umami taste  protein homooligomerization  protein heterooligomerization  calcium ion transmembrane transport  
NDEx NetworkCALHM1
Atlas of Cancer Signalling NetworkCALHM1
Wikipedia pathwaysCALHM1
Orthology - Evolution
OrthoDB255022
GeneTree (enSembl)ENSG00000185933
Phylogenetic Trees/Animal Genes : TreeFamCALHM1
Homologs : HomoloGeneCALHM1
Homology/Alignments : Family Browser (UCSC)CALHM1
Gene fusions - Rearrangements
Fusion : QuiverCALHM1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCALHM1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CALHM1
dbVarCALHM1
ClinVarCALHM1
MonarchCALHM1
1000_GenomesCALHM1 
Exome Variant ServerCALHM1
GNOMAD BrowserENSG00000185933
Varsome BrowserCALHM1
ACMGCALHM1 variants
VarityQ8IU99
Genomic Variants (DGV)CALHM1 [DGVbeta]
DECIPHERCALHM1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCALHM1 
Mutations
ICGC Data PortalCALHM1 
TCGA Data PortalCALHM1 
Broad Tumor PortalCALHM1
OASIS PortalCALHM1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCALHM1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCALHM1
Mutations and Diseases : HGMDCALHM1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaCALHM1
DgiDB (Drug Gene Interaction Database)CALHM1
DoCM (Curated mutations)CALHM1
CIViC (Clinical Interpretations of Variants in Cancer)CALHM1
Cancer3DCALHM1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612234   
Orphanet
DisGeNETCALHM1
MedgenCALHM1
Genetic Testing Registry CALHM1
NextProtQ8IU99 [Medical]
GENETestsCALHM1
Target ValidationCALHM1
Huge Navigator CALHM1 [HugePedia]
ClinGenCALHM1
Clinical trials, drugs, therapy
MyCancerGenomeCALHM1
Protein Interactions : CTDCALHM1
Pharm GKB GenePA162380954
PharosQ8IU99
Clinical trialCALHM1
Miscellaneous
canSAR (ICR)CALHM1
HarmonizomeCALHM1
DataMed IndexCALHM1
Probes
Litterature
PubMed45 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCALHM1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:44:42 CEST 2021

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