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CALHM1 (calcium homeostasis modulator 1)

Identity

Alias_namesFAM26C
family with sequence similarity 26, member C
Other alias
HGNC (Hugo) CALHM1
LocusID (NCBI) 255022
Atlas_Id 61387
Location 10q24.33  [Link to chromosome band 10q24]
Location_base_pair Starts at 103453387 and ends at 103458891 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CALHM1   23494
Cards
Entrez_Gene (NCBI)CALHM1  255022  calcium homeostasis modulator 1
AliasesFAM26C
GeneCards (Weizmann)CALHM1
Ensembl hg19 (Hinxton)ENSG00000185933 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185933 [Gene_View]  chr10:103453387-103458891 [Contig_View]  CALHM1 [Vega]
ICGC DataPortalENSG00000185933
TCGA cBioPortalCALHM1
AceView (NCBI)CALHM1
Genatlas (Paris)CALHM1
WikiGenes255022
SOURCE (Princeton)CALHM1
Genetics Home Reference (NIH)CALHM1
Genomic and cartography
GoldenPath hg38 (UCSC)CALHM1  -     chr10:103453387-103458891 -  10q24.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CALHM1  -     10q24.33   [Description]    (hg19-Feb_2009)
EnsemblCALHM1 - 10q24.33 [CytoView hg19]  CALHM1 - 10q24.33 [CytoView hg38]
Mapping of homologs : NCBICALHM1 [Mapview hg19]  CALHM1 [Mapview hg38]
OMIM612234   
Gene and transcription
Genbank (Entrez)BC036193 BC036208 JF432767
RefSeq transcript (Entrez)NM_001001412
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CALHM1
Cluster EST : UnigeneHs.680365 [ NCBI ]
CGAP (NCI)Hs.680365
Alternative Splicing GalleryENSG00000185933
Gene ExpressionCALHM1 [ NCBI-GEO ]   CALHM1 [ EBI - ARRAY_EXPRESS ]   CALHM1 [ SEEK ]   CALHM1 [ MEM ]
Gene Expression Viewer (FireBrowse)CALHM1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)255022
GTEX Portal (Tissue expression)CALHM1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IU99   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IU99  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IU99
Splice isoforms : SwissVarQ8IU99
PhosPhoSitePlusQ8IU99
Domains : Interpro (EBI)CALHM1    FAM26   
Domain families : Pfam (Sanger)Ca_hom_mod (PF14798)   
Domain families : Pfam (NCBI)pfam14798   
Conserved Domain (NCBI)CALHM1
DMDM Disease mutations255022
Blocks (Seattle)CALHM1
SuperfamilyQ8IU99
Human Protein AtlasENSG00000185933
Peptide AtlasQ8IU99
HPRD16879
IPIIPI00292438   
Protein Interaction databases
DIP (DOE-UCLA)Q8IU99
IntAct (EBI)Q8IU99
FunCoupENSG00000185933
BioGRIDCALHM1
STRING (EMBL)CALHM1
ZODIACCALHM1
Ontologies - Pathways
QuickGOQ8IU99
Ontology : AmiGOcalcium activated cation channel activity  voltage-gated ion channel activity  voltage-gated calcium channel activity  endoplasmic reticulum membrane  integral component of plasma membrane  cation transport  ATP transport  regulation of ion transmembrane transport  identical protein binding  sensory perception of bitter taste  sensory perception of sweet taste  sensory perception of umami taste  protein homooligomerization  calcium ion transmembrane transport  
Ontology : EGO-EBIcalcium activated cation channel activity  voltage-gated ion channel activity  voltage-gated calcium channel activity  endoplasmic reticulum membrane  integral component of plasma membrane  cation transport  ATP transport  regulation of ion transmembrane transport  identical protein binding  sensory perception of bitter taste  sensory perception of sweet taste  sensory perception of umami taste  protein homooligomerization  calcium ion transmembrane transport  
NDEx NetworkCALHM1
Atlas of Cancer Signalling NetworkCALHM1
Wikipedia pathwaysCALHM1
Orthology - Evolution
OrthoDB255022
GeneTree (enSembl)ENSG00000185933
Phylogenetic Trees/Animal Genes : TreeFamCALHM1
HOVERGENQ8IU99
HOGENOMQ8IU99
Homologs : HomoloGeneCALHM1
Homology/Alignments : Family Browser (UCSC)CALHM1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCALHM1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CALHM1
dbVarCALHM1
ClinVarCALHM1
1000_GenomesCALHM1 
Exome Variant ServerCALHM1
ExAC (Exome Aggregation Consortium)CALHM1 (select the gene name)
Genetic variants : HAPMAP255022
Genomic Variants (DGV)CALHM1 [DGVbeta]
DECIPHERCALHM1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCALHM1 
Mutations
ICGC Data PortalCALHM1 
TCGA Data PortalCALHM1 
Broad Tumor PortalCALHM1
OASIS PortalCALHM1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCALHM1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCALHM1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CALHM1
DgiDB (Drug Gene Interaction Database)CALHM1
DoCM (Curated mutations)CALHM1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CALHM1 (select a term)
intoGenCALHM1
Cancer3DCALHM1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612234   
Orphanet
MedgenCALHM1
Genetic Testing Registry CALHM1
NextProtQ8IU99 [Medical]
TSGene255022
GENETestsCALHM1
Target ValidationCALHM1
Huge Navigator CALHM1 [HugePedia]
snp3D : Map Gene to Disease255022
BioCentury BCIQCALHM1
ClinGenCALHM1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD255022
Chemical/Pharm GKB GenePA162380954
Clinical trialCALHM1
Miscellaneous
canSAR (ICR)CALHM1 (select the gene name)
Probes
Litterature
PubMed41 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCALHM1
EVEXCALHM1
GoPubMedCALHM1
iHOPCALHM1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:41:58 CEST 2017

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