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CALHM2 (calcium homeostasis modulator 2)

Identity

Alias_namesFAM26B
family with sequence similarity 26, member B
Other alias
HGNC (Hugo) CALHM2
LocusID (NCBI) 51063
Atlas_Id 61388
Location 10q24.33  [Link to chromosome band 10q24]
Location_base_pair Starts at 103446786 and ends at 103452405 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ITGAE (17p13.2) / CALHM2 (10q24.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CALHM2   23493
Cards
Entrez_Gene (NCBI)CALHM2  51063  calcium homeostasis modulator 2
AliasesFAM26B
GeneCards (Weizmann)CALHM2
Ensembl hg19 (Hinxton)ENSG00000138172 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000138172 [Gene_View]  chr10:103446786-103452405 [Contig_View]  CALHM2 [Vega]
ICGC DataPortalENSG00000138172
TCGA cBioPortalCALHM2
AceView (NCBI)CALHM2
Genatlas (Paris)CALHM2
WikiGenes51063
SOURCE (Princeton)CALHM2
Genetics Home Reference (NIH)CALHM2
Genomic and cartography
GoldenPath hg38 (UCSC)CALHM2  -     chr10:103446786-103452405 -  10q24.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CALHM2  -     10q24.33   [Description]    (hg19-Feb_2009)
EnsemblCALHM2 - 10q24.33 [CytoView hg19]  CALHM2 - 10q24.33 [CytoView hg38]
Mapping of homologs : NCBICALHM2 [Mapview hg19]  CALHM2 [Mapview hg38]
OMIM612235   
Gene and transcription
Genbank (Entrez)AF131810 AK022195 AK125276 BC000039 CA432041
RefSeq transcript (Entrez)NM_015916
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CALHM2
Cluster EST : UnigeneHs.241545 [ NCBI ]
CGAP (NCI)Hs.241545
Alternative Splicing GalleryENSG00000138172
Gene ExpressionCALHM2 [ NCBI-GEO ]   CALHM2 [ EBI - ARRAY_EXPRESS ]   CALHM2 [ SEEK ]   CALHM2 [ MEM ]
Gene Expression Viewer (FireBrowse)CALHM2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51063
GTEX Portal (Tissue expression)CALHM2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HA72   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HA72  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HA72
Splice isoforms : SwissVarQ9HA72
PhosPhoSitePlusQ9HA72
Domains : Interpro (EBI)CALHM2    FAM26   
Domain families : Pfam (Sanger)Ca_hom_mod (PF14798)   
Domain families : Pfam (NCBI)pfam14798   
Conserved Domain (NCBI)CALHM2
DMDM Disease mutations51063
Blocks (Seattle)CALHM2
SuperfamilyQ9HA72
Human Protein AtlasENSG00000138172
Peptide AtlasQ9HA72
HPRD13301
IPIIPI00153050   IPI00445902   IPI00383878   
Protein Interaction databases
DIP (DOE-UCLA)Q9HA72
IntAct (EBI)Q9HA72
FunCoupENSG00000138172
BioGRIDCALHM2
STRING (EMBL)CALHM2
ZODIACCALHM2
Ontologies - Pathways
QuickGOQ9HA72
Ontology : AmiGOcation channel activity  integral component of plasma membrane  ion transmembrane transport  cation transmembrane transport  
Ontology : EGO-EBIcation channel activity  integral component of plasma membrane  ion transmembrane transport  cation transmembrane transport  
NDEx NetworkCALHM2
Atlas of Cancer Signalling NetworkCALHM2
Wikipedia pathwaysCALHM2
Orthology - Evolution
OrthoDB51063
GeneTree (enSembl)ENSG00000138172
Phylogenetic Trees/Animal Genes : TreeFamCALHM2
HOVERGENQ9HA72
HOGENOMQ9HA72
Homologs : HomoloGeneCALHM2
Homology/Alignments : Family Browser (UCSC)CALHM2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCALHM2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CALHM2
dbVarCALHM2
ClinVarCALHM2
1000_GenomesCALHM2 
Exome Variant ServerCALHM2
ExAC (Exome Aggregation Consortium)CALHM2 (select the gene name)
Genetic variants : HAPMAP51063
Genomic Variants (DGV)CALHM2 [DGVbeta]
DECIPHERCALHM2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCALHM2 
Mutations
ICGC Data PortalCALHM2 
TCGA Data PortalCALHM2 
Broad Tumor PortalCALHM2
OASIS PortalCALHM2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCALHM2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCALHM2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CALHM2
DgiDB (Drug Gene Interaction Database)CALHM2
DoCM (Curated mutations)CALHM2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CALHM2 (select a term)
intoGenCALHM2
Cancer3DCALHM2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612235   
Orphanet
MedgenCALHM2
Genetic Testing Registry CALHM2
NextProtQ9HA72 [Medical]
TSGene51063
GENETestsCALHM2
Target ValidationCALHM2
Huge Navigator CALHM2 [HugePedia]
snp3D : Map Gene to Disease51063
BioCentury BCIQCALHM2
ClinGenCALHM2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51063
Chemical/Pharm GKB GenePA162380963
Clinical trialCALHM2
Miscellaneous
canSAR (ICR)CALHM2 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCALHM2
EVEXCALHM2
GoPubMedCALHM2
iHOPCALHM2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:03:48 CEST 2017

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