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CALHM2 (calcium homeostasis modulator family member 2)

Identity

Alias (NCBI)FAM26B
HGNC (Hugo) CALHM2
HGNC Previous nameFAM26B
HGNC Previous namefamily with sequence similarity 26, member B
LocusID (NCBI) 51063
Atlas_Id 61388
Location 10q24.33  [Link to chromosome band 10q24]
Location_base_pair Starts at 103446786 and ends at 103452370 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ITGAE (17p13.2) / CALHM2 (10q24.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)CALHM2   23493
Cards
Entrez_Gene (NCBI)CALHM2    calcium homeostasis modulator family member 2
AliasesFAM26B
GeneCards (Weizmann)CALHM2
Ensembl hg19 (Hinxton)ENSG00000138172 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000138172 [Gene_View]  ENSG00000138172 [Sequence]  chr10:103446786-103452370 [Contig_View]  CALHM2 [Vega]
ICGC DataPortalENSG00000138172
TCGA cBioPortalCALHM2
AceView (NCBI)CALHM2
Genatlas (Paris)CALHM2
SOURCE (Princeton)CALHM2
Genetics Home Reference (NIH)CALHM2
Genomic and cartography
GoldenPath hg38 (UCSC)CALHM2  -     chr10:103446786-103452370 -  10q24.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CALHM2  -     10q24.33   [Description]    (hg19-Feb_2009)
GoldenPathCALHM2 - 10q24.33 [CytoView hg19]  CALHM2 - 10q24.33 [CytoView hg38]
ImmunoBaseENSG00000138172
Genome Data Viewer NCBICALHM2 [Mapview hg19]  
OMIM612235   
Gene and transcription
Genbank (Entrez)AF131810 AK022195 AK125276 BC000039 CA432041
RefSeq transcript (Entrez)NM_015916
Consensus coding sequences : CCDS (NCBI)CALHM2
Gene ExpressionCALHM2 [ NCBI-GEO ]   CALHM2 [ EBI - ARRAY_EXPRESS ]   CALHM2 [ SEEK ]   CALHM2 [ MEM ]
Gene Expression Viewer (FireBrowse)CALHM2 [ Firebrowse - Broad ]
GenevisibleExpression of CALHM2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51063
GTEX Portal (Tissue expression)CALHM2
Human Protein AtlasENSG00000138172-CALHM2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HA72   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HA72  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HA72
PhosPhoSitePlusQ9HA72
Domains : Interpro (EBI)CALHM    CALHM2   
Domain families : Pfam (Sanger)Ca_hom_mod (PF14798)   
Domain families : Pfam (NCBI)pfam14798   
Conserved Domain (NCBI)CALHM2
PDB (RSDB)6LMU    6LMW    6LMX    6UIV    6UIW    6UIX    6VAI    6VAK    6VAL   
PDB Europe6LMU    6LMW    6LMX    6UIV    6UIW    6UIX    6VAI    6VAK    6VAL   
PDB (PDBSum)6LMU    6LMW    6LMX    6UIV    6UIW    6UIX    6VAI    6VAK    6VAL   
PDB (IMB)6LMU    6LMW    6LMX    6UIV    6UIW    6UIX    6VAI    6VAK    6VAL   
Structural Biology KnowledgeBase6LMU    6LMW    6LMX    6UIV    6UIW    6UIX    6VAI    6VAK    6VAL   
SCOP (Structural Classification of Proteins)6LMU    6LMW    6LMX    6UIV    6UIW    6UIX    6VAI    6VAK    6VAL   
CATH (Classification of proteins structures)6LMU    6LMW    6LMX    6UIV    6UIW    6UIX    6VAI    6VAK    6VAL   
SuperfamilyQ9HA72
AlphaFold pdb e-kbQ9HA72   
Human Protein Atlas [tissue]ENSG00000138172-CALHM2 [tissue]
HPRD13301
Protein Interaction databases
DIP (DOE-UCLA)Q9HA72
IntAct (EBI)Q9HA72
BioGRIDCALHM2
STRING (EMBL)CALHM2
ZODIACCALHM2
Ontologies - Pathways
QuickGOQ9HA72
Ontology : AmiGOcation channel activity  integral component of plasma membrane  positive regulation of apoptotic process  cation transmembrane transport  
Ontology : EGO-EBIcation channel activity  integral component of plasma membrane  positive regulation of apoptotic process  cation transmembrane transport  
NDEx NetworkCALHM2
Atlas of Cancer Signalling NetworkCALHM2
Wikipedia pathwaysCALHM2
Orthology - Evolution
OrthoDB51063
GeneTree (enSembl)ENSG00000138172
Phylogenetic Trees/Animal Genes : TreeFamCALHM2
Homologs : HomoloGeneCALHM2
Homology/Alignments : Family Browser (UCSC)CALHM2
Gene fusions - Rearrangements
Fusion : QuiverCALHM2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCALHM2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CALHM2
dbVarCALHM2
ClinVarCALHM2
MonarchCALHM2
1000_GenomesCALHM2 
Exome Variant ServerCALHM2
GNOMAD BrowserENSG00000138172
Varsome BrowserCALHM2
ACMGCALHM2 variants
VarityQ9HA72
Genomic Variants (DGV)CALHM2 [DGVbeta]
DECIPHERCALHM2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCALHM2 
Mutations
ICGC Data PortalCALHM2 
TCGA Data PortalCALHM2 
Broad Tumor PortalCALHM2
OASIS PortalCALHM2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCALHM2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCALHM2
Mutations and Diseases : HGMDCALHM2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaCALHM2
DgiDB (Drug Gene Interaction Database)CALHM2
DoCM (Curated mutations)CALHM2
CIViC (Clinical Interpretations of Variants in Cancer)CALHM2
Cancer3DCALHM2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612235   
Orphanet
DisGeNETCALHM2
MedgenCALHM2
Genetic Testing Registry CALHM2
NextProtQ9HA72 [Medical]
GENETestsCALHM2
Target ValidationCALHM2
Huge Navigator CALHM2 [HugePedia]
ClinGenCALHM2
Clinical trials, drugs, therapy
MyCancerGenomeCALHM2
Protein Interactions : CTDCALHM2
Pharm GKB GenePA162380963
PharosQ9HA72
Clinical trialCALHM2
Miscellaneous
canSAR (ICR)CALHM2
HarmonizomeCALHM2
DataMed IndexCALHM2
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCALHM2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:44:42 CEST 2021

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