Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CALHM3 (calcium homeostasis modulator 3)

Identity

Alias_namesFAM26A
family with sequence similarity 26, member A
Alias_symbol (synonym)bA225H22.7
Other alias
HGNC (Hugo) CALHM3
LocusID (NCBI) 119395
Atlas_Id 61389
Location 10q24.33  [Link to chromosome band 10q24]
Location_base_pair Starts at 103472804 and ends at 103479240 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CALHM3   23458
Cards
Entrez_Gene (NCBI)CALHM3  119395  calcium homeostasis modulator 3
AliasesFAM26A; bA225H22.7
GeneCards (Weizmann)CALHM3
Ensembl hg19 (Hinxton)ENSG00000183128 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183128 [Gene_View]  chr10:103472804-103479240 [Contig_View]  CALHM3 [Vega]
ICGC DataPortalENSG00000183128
TCGA cBioPortalCALHM3
AceView (NCBI)CALHM3
Genatlas (Paris)CALHM3
WikiGenes119395
SOURCE (Princeton)CALHM3
Genetics Home Reference (NIH)CALHM3
Genomic and cartography
GoldenPath hg38 (UCSC)CALHM3  -     chr10:103472804-103479240 -  10q24.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CALHM3  -     10q24.33   [Description]    (hg19-Feb_2009)
EnsemblCALHM3 - 10q24.33 [CytoView hg19]  CALHM3 - 10q24.33 [CytoView hg38]
Mapping of homologs : NCBICALHM3 [Mapview hg19]  CALHM3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC039499 BC043367 HQ257957
RefSeq transcript (Entrez)NM_001129742 NM_182494
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CALHM3
Cluster EST : UnigeneHs.364624 [ NCBI ]
CGAP (NCI)Hs.364624
Alternative Splicing GalleryENSG00000183128
Gene ExpressionCALHM3 [ NCBI-GEO ]   CALHM3 [ EBI - ARRAY_EXPRESS ]   CALHM3 [ SEEK ]   CALHM3 [ MEM ]
Gene Expression Viewer (FireBrowse)CALHM3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)119395
GTEX Portal (Tissue expression)CALHM3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86XJ0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86XJ0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86XJ0
Splice isoforms : SwissVarQ86XJ0
PhosPhoSitePlusQ86XJ0
Domains : Interpro (EBI)CALHM3    FAM26   
Domain families : Pfam (Sanger)Ca_hom_mod (PF14798)   
Domain families : Pfam (NCBI)pfam14798   
Conserved Domain (NCBI)CALHM3
DMDM Disease mutations119395
Blocks (Seattle)CALHM3
SuperfamilyQ86XJ0
Human Protein AtlasENSG00000183128
Peptide AtlasQ86XJ0
HPRD13300
IPIIPI00329230   IPI00607857   
Protein Interaction databases
DIP (DOE-UCLA)Q86XJ0
IntAct (EBI)Q86XJ0
FunCoupENSG00000183128
BioGRIDCALHM3
STRING (EMBL)CALHM3
ZODIACCALHM3
Ontologies - Pathways
QuickGOQ86XJ0
Ontology : AmiGOcation channel activity  integral component of plasma membrane  ion transmembrane transport  cation transmembrane transport  
Ontology : EGO-EBIcation channel activity  integral component of plasma membrane  ion transmembrane transport  cation transmembrane transport  
NDEx NetworkCALHM3
Atlas of Cancer Signalling NetworkCALHM3
Wikipedia pathwaysCALHM3
Orthology - Evolution
OrthoDB119395
GeneTree (enSembl)ENSG00000183128
Phylogenetic Trees/Animal Genes : TreeFamCALHM3
HOVERGENQ86XJ0
HOGENOMQ86XJ0
Homologs : HomoloGeneCALHM3
Homology/Alignments : Family Browser (UCSC)CALHM3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCALHM3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CALHM3
dbVarCALHM3
ClinVarCALHM3
1000_GenomesCALHM3 
Exome Variant ServerCALHM3
ExAC (Exome Aggregation Consortium)CALHM3 (select the gene name)
Genetic variants : HAPMAP119395
Genomic Variants (DGV)CALHM3 [DGVbeta]
DECIPHERCALHM3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCALHM3 
Mutations
ICGC Data PortalCALHM3 
TCGA Data PortalCALHM3 
Broad Tumor PortalCALHM3
OASIS PortalCALHM3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCALHM3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCALHM3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CALHM3
DgiDB (Drug Gene Interaction Database)CALHM3
DoCM (Curated mutations)CALHM3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CALHM3 (select a term)
intoGenCALHM3
Cancer3DCALHM3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCaLHL3
Genetic Testing Registry CALHM3
NextProtQ86XJ0 [Medical]
TSGene119395
GENETestsCALHM3
Target ValidationCALHM3
Huge Navigator CALHM3 [HugePedia]
snp3D : Map Gene to Disease119395
BioCentury BCIQCALHM3
ClinGenCALHM3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD119395
Chemical/Pharm GKB GenePA162380976
Clinical trialCALHM3
Miscellaneous
canSAR (ICR)CALHM3 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCALHM3
EVEXCALHM3
GoPubMedCALHM3
iHOPCALHM3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:03:48 CEST 2017

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