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CALHM4 (calcium homeostasis modulator family member 4)

Identity

Alias_namesC6orf78
FAM26D
chromosome 6 open reading frame 78
family with sequence similarity 26, member D
family with sequence similarity 26 member D
Alias_symbol (synonym)FLJ32239
Other alias
HGNC (Hugo) CALHM4
LocusID (NCBI) 221301
Atlas_Id 79623
Location 6q22.1  [Link to chromosome band 6q22]
Location_base_pair Starts at 116529013 and ends at 116561123 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)CALHM4   21094
Cards
Entrez_Gene (NCBI)CALHM4  221301  calcium homeostasis modulator family member 4
AliasesC6orf78; FAM26D
GeneCards (Weizmann)CALHM4
Ensembl hg19 (Hinxton)ENSG00000164451 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164451 [Gene_View]  ENSG00000164451 [Sequence]  chr6:116529013-116561123 [Contig_View]  CALHM4 [Vega]
ICGC DataPortalENSG00000164451
TCGA cBioPortalCALHM4
AceView (NCBI)CALHM4
Genatlas (Paris)CALHM4
WikiGenes221301
SOURCE (Princeton)CALHM4
Genetics Home Reference (NIH)CALHM4
Genomic and cartography
GoldenPath hg38 (UCSC)CALHM4  -     chr6:116529013-116561123 +  6q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CALHM4  -     6q22.1   [Description]    (hg19-Feb_2009)
EnsemblCALHM4 - 6q22.1 [CytoView hg19]  CALHM4 - 6q22.1 [CytoView hg38]
Mapping of homologs : NCBICALHM4 [Mapview hg19]  CALHM4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK056801 AK300309 AY358252 BC057769 DA855717
RefSeq transcript (Entrez)NM_001256887 NM_001256888 NM_001256889 NM_153036
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CALHM4
Cluster EST : UnigeneHs.350750 [ NCBI ]
CGAP (NCI)Hs.350750
Alternative Splicing GalleryENSG00000164451
Gene ExpressionCALHM4 [ NCBI-GEO ]   CALHM4 [ EBI - ARRAY_EXPRESS ]   CALHM4 [ SEEK ]   CALHM4 [ MEM ]
Gene Expression Viewer (FireBrowse)CALHM4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)221301
GTEX Portal (Tissue expression)CALHM4
Human Protein AtlasENSG00000164451-CALHM4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5JW98   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5JW98  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5JW98
Splice isoforms : SwissVarQ5JW98
PhosPhoSitePlusQ5JW98
Domains : Interpro (EBI)FAM26    FAM26D   
Domain families : Pfam (Sanger)Ca_hom_mod (PF14798)   
Domain families : Pfam (NCBI)pfam14798   
Conserved Domain (NCBI)CALHM4
DMDM Disease mutations221301
Blocks (Seattle)CALHM4
SuperfamilyQ5JW98
Human Protein Atlas [tissue]ENSG00000164451-CALHM4 [tissue]
Peptide AtlasQ5JW98
IPIIPI00065530   IPI00942107   IPI00745328   IPI00604642   IPI00879722   
Protein Interaction databases
DIP (DOE-UCLA)Q5JW98
IntAct (EBI)Q5JW98
FunCoupENSG00000164451
BioGRIDCALHM4
STRING (EMBL)CALHM4
ZODIACCALHM4
Ontologies - Pathways
QuickGOQ5JW98
Ontology : AmiGOcation channel activity  integral component of plasma membrane  ion transmembrane transport  cation transmembrane transport  
Ontology : EGO-EBIcation channel activity  integral component of plasma membrane  ion transmembrane transport  cation transmembrane transport  
NDEx NetworkCALHM4
Atlas of Cancer Signalling NetworkCALHM4
Wikipedia pathwaysCALHM4
Orthology - Evolution
OrthoDB221301
GeneTree (enSembl)ENSG00000164451
Phylogenetic Trees/Animal Genes : TreeFamCALHM4
HOVERGENQ5JW98
HOGENOMQ5JW98
Homologs : HomoloGeneCALHM4
Homology/Alignments : Family Browser (UCSC)CALHM4
Gene fusions - Rearrangements
Fusion : QuiverCALHM4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCALHM4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CALHM4
dbVarCALHM4
ClinVarCALHM4
1000_GenomesCALHM4 
Exome Variant ServerCALHM4
ExAC (Exome Aggregation Consortium)ENSG00000164451
GNOMAD BrowserENSG00000164451
Varsome BrowserCALHM4
Genetic variants : HAPMAP221301
Genomic Variants (DGV)CALHM4 [DGVbeta]
DECIPHERCALHM4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCALHM4 
Mutations
ICGC Data PortalCALHM4 
TCGA Data PortalCALHM4 
Broad Tumor PortalCALHM4
OASIS PortalCALHM4 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCALHM4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CALHM4
DgiDB (Drug Gene Interaction Database)CALHM4
DoCM (Curated mutations)CALHM4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CALHM4 (select a term)
intoGenCALHM4
Cancer3DCALHM4(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCALHM4
MedgenCALHM4
Genetic Testing Registry CALHM4
NextProtQ5JW98 [Medical]
TSGene221301
GENETestsCALHM4
Target ValidationCALHM4
Huge Navigator CALHM4 [HugePedia]
snp3D : Map Gene to Disease221301
BioCentury BCIQCALHM4
ClinGenCALHM4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD221301
Chemical/Pharm GKB GenePA162387625
Clinical trialCALHM4
Miscellaneous
canSAR (ICR)CALHM4 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCALHM4
EVEXCALHM4
GoPubMedCALHM4
iHOPCALHM4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:39:07 CEST 2018

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