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CALHM5 (calcium homeostasis modulator family member 5)

Identity

Alias_namesC6orf188
FAM26E
chromosome 6 open reading frame 188
family with sequence similarity 26, member E
family with sequence similarity 26 member E
Alias_symbol (synonym)dJ493F7.3
MGC45451
Other alias
HGNC (Hugo) CALHM5
LocusID (NCBI) 254228
Atlas_Id 79009
Location 6q22.1  [Link to chromosome band 6q22]
Location_base_pair Starts at 116511645 and ends at 116524792 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)CALHM5   21568
Cards
Entrez_Gene (NCBI)CALHM5  254228  calcium homeostasis modulator family member 5
AliasesC6orf188; FAM26E; dJ493F7.3
GeneCards (Weizmann)CALHM5
Ensembl hg19 (Hinxton)ENSG00000178033 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000178033 [Gene_View]  ENSG00000178033 [Sequence]  chr6:116511645-116524792 [Contig_View]  CALHM5 [Vega]
ICGC DataPortalENSG00000178033
TCGA cBioPortalCALHM5
AceView (NCBI)CALHM5
Genatlas (Paris)CALHM5
WikiGenes254228
SOURCE (Princeton)CALHM5
Genetics Home Reference (NIH)CALHM5
Genomic and cartography
GoldenPath hg38 (UCSC)CALHM5  -     chr6:116511645-116524792 +  6q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CALHM5  -     6q22.1   [Description]    (hg19-Feb_2009)
EnsemblCALHM5 - 6q22.1 [CytoView hg19]  CALHM5 - 6q22.1 [CytoView hg38]
Mapping of homologs : NCBICALHM5 [Mapview hg19]  CALHM5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA468683 AK023730 AK094140 AK315572 BC032556
RefSeq transcript (Entrez)NM_153711
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CALHM5
Cluster EST : UnigeneHs.660142 [ NCBI ]
CGAP (NCI)Hs.660142
Alternative Splicing GalleryENSG00000178033
Gene ExpressionCALHM5 [ NCBI-GEO ]   CALHM5 [ EBI - ARRAY_EXPRESS ]   CALHM5 [ SEEK ]   CALHM5 [ MEM ]
Gene Expression Viewer (FireBrowse)CALHM5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)254228
GTEX Portal (Tissue expression)CALHM5
Human Protein AtlasENSG00000178033-CALHM5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N5C1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N5C1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N5C1
Splice isoforms : SwissVarQ8N5C1
PhosPhoSitePlusQ8N5C1
Domains : Interpro (EBI)FAM26    FAM26E   
Domain families : Pfam (Sanger)Ca_hom_mod (PF14798)   
Domain families : Pfam (NCBI)pfam14798   
Conserved Domain (NCBI)CALHM5
DMDM Disease mutations254228
Blocks (Seattle)CALHM5
SuperfamilyQ8N5C1
Human Protein Atlas [tissue]ENSG00000178033-CALHM5 [tissue]
Peptide AtlasQ8N5C1
IPIIPI00166835   
Protein Interaction databases
DIP (DOE-UCLA)Q8N5C1
IntAct (EBI)Q8N5C1
FunCoupENSG00000178033
BioGRIDCALHM5
STRING (EMBL)CALHM5
ZODIACCALHM5
Ontologies - Pathways
QuickGOQ8N5C1
Ontology : AmiGOcation channel activity  integral component of plasma membrane  ion transmembrane transport  extracellular exosome  cation transmembrane transport  
Ontology : EGO-EBIcation channel activity  integral component of plasma membrane  ion transmembrane transport  extracellular exosome  cation transmembrane transport  
NDEx NetworkCALHM5
Atlas of Cancer Signalling NetworkCALHM5
Wikipedia pathwaysCALHM5
Orthology - Evolution
OrthoDB254228
GeneTree (enSembl)ENSG00000178033
Phylogenetic Trees/Animal Genes : TreeFamCALHM5
HOVERGENQ8N5C1
HOGENOMQ8N5C1
Homologs : HomoloGeneCALHM5
Homology/Alignments : Family Browser (UCSC)CALHM5
Gene fusions - Rearrangements
Fusion : QuiverCALHM5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCALHM5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CALHM5
dbVarCALHM5
ClinVarCALHM5
1000_GenomesCALHM5 
Exome Variant ServerCALHM5
ExAC (Exome Aggregation Consortium)ENSG00000178033
GNOMAD BrowserENSG00000178033
Varsome BrowserCALHM5
Genetic variants : HAPMAP254228
Genomic Variants (DGV)CALHM5 [DGVbeta]
DECIPHERCALHM5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCALHM5 
Mutations
ICGC Data PortalCALHM5 
TCGA Data PortalCALHM5 
Broad Tumor PortalCALHM5
OASIS PortalCALHM5 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCALHM5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CALHM5
DgiDB (Drug Gene Interaction Database)CALHM5
DoCM (Curated mutations)CALHM5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CALHM5 (select a term)
intoGenCALHM5
Cancer3DCALHM5(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCALHM5
MedgenCALHM5
Genetic Testing Registry CALHM5
NextProtQ8N5C1 [Medical]
TSGene254228
GENETestsCALHM5
Target ValidationCALHM5
Huge Navigator CALHM5 [HugePedia]
snp3D : Map Gene to Disease254228
BioCentury BCIQCALHM5
ClinGenCALHM5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD254228
Chemical/Pharm GKB GenePA162387635
Clinical trialCALHM5
Miscellaneous
canSAR (ICR)CALHM5 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCALHM5
EVEXCALHM5
GoPubMedCALHM5
iHOPCALHM5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:39:08 CEST 2018

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