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CALHM6 (calcium homeostasis modulator family member 6)

Identity

Alias_namesC6orf187
FAM26F
chromosome 6 open reading frame 187
family with sequence similarity 26, member F
family with sequence similarity 26 member F
Alias_symbol (synonym)RP1-93H18.5
OTTHUMP00000017061
OTTHUMP00000017062
dJ93H18.5
INAM
Other alias
HGNC (Hugo) CALHM6
LocusID (NCBI) 441168
Atlas_Id 79499
Location 6q22.1  [Link to chromosome band 6q22]
Location_base_pair Starts at 116461370 and ends at 116463771 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)CALHM6   33391
Cards
Entrez_Gene (NCBI)CALHM6  441168  calcium homeostasis modulator family member 6
AliasesC6orf187; FAM26F; INAM; dJ93H18.5
GeneCards (Weizmann)CALHM6
Ensembl hg19 (Hinxton)ENSG00000188820 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188820 [Gene_View]  ENSG00000188820 [Sequence]  chr6:116461370-116463771 [Contig_View]  CALHM6 [Vega]
ICGC DataPortalENSG00000188820
TCGA cBioPortalCALHM6
AceView (NCBI)CALHM6
Genatlas (Paris)CALHM6
WikiGenes441168
SOURCE (Princeton)CALHM6
Genetics Home Reference (NIH)CALHM6
Genomic and cartography
GoldenPath hg38 (UCSC)CALHM6  -     chr6:116461370-116463771 +  6q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CALHM6  -     6q22.1   [Description]    (hg19-Feb_2009)
EnsemblCALHM6 - 6q22.1 [CytoView hg19]  CALHM6 - 6q22.1 [CytoView hg38]
Mapping of homologs : NCBICALHM6 [Mapview hg19]  CALHM6 [Mapview hg38]
OMIM617305   
Gene and transcription
Genbank (Entrez)AF086130 AV734646 BC146842 BM704529 DN997293
RefSeq transcript (Entrez)NM_001010919 NM_001276460
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CALHM6
Cluster EST : UnigeneHs.381220 [ NCBI ]
CGAP (NCI)Hs.381220
Alternative Splicing GalleryENSG00000188820
Gene ExpressionCALHM6 [ NCBI-GEO ]   CALHM6 [ EBI - ARRAY_EXPRESS ]   CALHM6 [ SEEK ]   CALHM6 [ MEM ]
Gene Expression Viewer (FireBrowse)CALHM6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)441168
GTEX Portal (Tissue expression)CALHM6
Human Protein AtlasENSG00000188820-CALHM6 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5R3K3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5R3K3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5R3K3
Splice isoforms : SwissVarQ5R3K3
PhosPhoSitePlusQ5R3K3
Domains : Interpro (EBI)FAM26    FAM26F   
Domain families : Pfam (Sanger)Ca_hom_mod (PF14798)   
Domain families : Pfam (NCBI)pfam14798   
Conserved Domain (NCBI)CALHM6
DMDM Disease mutations441168
Blocks (Seattle)CALHM6
SuperfamilyQ5R3K3
Human Protein Atlas [tissue]ENSG00000188820-CALHM6 [tissue]
Peptide AtlasQ5R3K3
IPIIPI00455731   IPI00645128   IPI00644540   
Protein Interaction databases
DIP (DOE-UCLA)Q5R3K3
IntAct (EBI)Q5R3K3
FunCoupENSG00000188820
BioGRIDCALHM6
STRING (EMBL)CALHM6
ZODIACCALHM6
Ontologies - Pathways
QuickGOQ5R3K3
Ontology : AmiGOcation channel activity  integral component of plasma membrane  ion transmembrane transport  cation transmembrane transport  
Ontology : EGO-EBIcation channel activity  integral component of plasma membrane  ion transmembrane transport  cation transmembrane transport  
NDEx NetworkCALHM6
Atlas of Cancer Signalling NetworkCALHM6
Wikipedia pathwaysCALHM6
Orthology - Evolution
OrthoDB441168
GeneTree (enSembl)ENSG00000188820
Phylogenetic Trees/Animal Genes : TreeFamCALHM6
HOVERGENQ5R3K3
HOGENOMQ5R3K3
Homologs : HomoloGeneCALHM6
Homology/Alignments : Family Browser (UCSC)CALHM6
Gene fusions - Rearrangements
Fusion : QuiverCALHM6
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCALHM6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CALHM6
dbVarCALHM6
ClinVarCALHM6
1000_GenomesCALHM6 
Exome Variant ServerCALHM6
ExAC (Exome Aggregation Consortium)ENSG00000188820
GNOMAD BrowserENSG00000188820
Varsome BrowserCALHM6
Genetic variants : HAPMAP441168
Genomic Variants (DGV)CALHM6 [DGVbeta]
DECIPHERCALHM6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCALHM6 
Mutations
ICGC Data PortalCALHM6 
TCGA Data PortalCALHM6 
Broad Tumor PortalCALHM6
OASIS PortalCALHM6 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCALHM6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CALHM6
DgiDB (Drug Gene Interaction Database)CALHM6
DoCM (Curated mutations)CALHM6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CALHM6 (select a term)
intoGenCALHM6
Cancer3DCALHM6(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617305   
Orphanet
DisGeNETCALHM6
MedgenCALHM6
Genetic Testing Registry CALHM6
NextProtQ5R3K3 [Medical]
TSGene441168
GENETestsCALHM6
Target ValidationCALHM6
Huge Navigator CALHM6 [HugePedia]
snp3D : Map Gene to Disease441168
BioCentury BCIQCALHM6
ClinGenCALHM6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD441168
Chemical/Pharm GKB GenePA162387644
Clinical trialCALHM6
Miscellaneous
canSAR (ICR)CALHM6 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCALHM6
EVEXCALHM6
GoPubMedCALHM6
iHOPCALHM6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:39:08 CEST 2018

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