Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CALM1 (calmodulin 1)

Identity

Alias_namesCALML2
calmodulin 1 (phosphorylase kinase, delta)
Alias_symbol (synonym)CAMI
PHKD
DD132
Other aliasCAM2
CAM3
CAMB
CAMC
CAMIII
CPVT4
LQT14
caM
HGNC (Hugo) CALM1
LocusID (NCBI) 801
Atlas_Id 903
Location 14q32.11  [Link to chromosome band 14q32]
Location_base_pair Starts at 90397029 and ends at 90408268 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AIMP1 (4q24) / CALM1 (14q32.11)CACNA1B (9q34.3) / CALM1 (14q32.11)CALM1 (14q32.11) / ABI2 (2q33.2)
CALM1 (14q32.11) / CALM1 (14q32.11)CALM1 (14q32.11) / CANX (5q35.3)CALM1 (14q32.11) / MGP (12p12.3)
CALM1 (14q32.11) / MINK1 (17p13.2)CALM1 (14q32.11) / PSME3 (17q21.31)CALM1 (14q32.11) / RALA (7p14.1)
CALM1 (14q32.11) / UNC5CL (6p21.1)CERS2 (1q21.3) / CALM1 (14q32.11)DCXR (17q25.3) / CALM1 (14q32.11)
FSCN1 (7p22.1) / CALM1 (14q32.11)HN1 (17q25.1) / CALM1 (14q32.11)IRF2BP2 (1q42.3) / CALM1 (14q32.11)
NRDE2 (14q32.11) / CALM1 (14q32.11)STAU1 (20q13.13) / CALM1 (14q32.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CALM1   1442
Cards
Entrez_Gene (NCBI)CALM1  801  calmodulin 1
AliasesCALML2; CAM2; CAM3; CAMB; 
CAMC; CAMI; CAMIII; CPVT4; DD132; LQT14; PHKD; caM
GeneCards (Weizmann)CALM1
Ensembl hg19 (Hinxton)ENSG00000198668 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198668 [Gene_View]  ENSG00000198668 [Sequence]  chr14:90397029-90408268 [Contig_View]  CALM1 [Vega]
ICGC DataPortalENSG00000198668
TCGA cBioPortalCALM1
AceView (NCBI)CALM1
Genatlas (Paris)CALM1
WikiGenes801
SOURCE (Princeton)CALM1
Genetics Home Reference (NIH)CALM1
Genomic and cartography
GoldenPath hg38 (UCSC)CALM1  -     chr14:90397029-90408268 +  14q32.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CALM1  -     14q32.11   [Description]    (hg19-Feb_2009)
GoldenPathCALM1 - 14q32.11 [CytoView hg19]  CALM1 - 14q32.11 [CytoView hg38]
Genome Data Viewer NCBICALM1 [Mapview hg19]  
OMIM114180   614916   616247   
Gene and transcription
Genbank (Entrez)AH005375 AI651063 AK289937 AU122722 AY189287
RefSeq transcript (Entrez)NM_001166106 NM_001363669 NM_001363670 NM_006888
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CALM1
Alternative Splicing GalleryENSG00000198668
Gene ExpressionCALM1 [ NCBI-GEO ]   CALM1 [ EBI - ARRAY_EXPRESS ]   CALM1 [ SEEK ]   CALM1 [ MEM ]
Gene Expression Viewer (FireBrowse)CALM1 [ Firebrowse - Broad ]
GenevisibleExpression of CALM1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)801
GTEX Portal (Tissue expression)CALM1
Human Protein AtlasENSG00000198668-CALM1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CALM1
DMDM Disease mutations801
Human Protein Atlas [tissue]ENSG00000198668-CALM1 [tissue]
HPRD00241
Protein Interaction databases
FunCoupENSG00000198668
BioGRIDCALM1
STRING (EMBL)CALM1
ZODIACCALM1
Ontologies - Pathways
snp3D : Map Gene to Disease801
BioCentury BCIQCALM1
ClinGenCALM1
Clinical trials, drugs, therapy
Protein Interactions : CTD801
Pharm GKB GenePA26035
Clinical trialCALM1
Miscellaneous
canSAR (ICR)CALM1 (select the gene name)
HarmonizomeCALM1
DataMed IndexCALM1
Probes
Litterature
PubMed499 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCALM1
EVEXCALM1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Jul 11 19:41:36 CEST 2020
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.