Atlas of Genetics and Cytogenetics in Oncology and Haematology

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CALM1 (calmodulin 1 (phosphorylase kinase, delta))

Identity

Other namesCALML2
CAMI
CPVT4
DD132
PHKD
caM
HGNC (Hugo) CALM1
LocusID (NCBI) 801
Location 14q32.11
Location_base_pair Starts at 90863327 and ends at 90874619 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CALM1   1442
Cards
Entrez_Gene (NCBI)CALM1  801  calmodulin 1 (phosphorylase kinase, delta)
GeneCards (Weizmann)CALM1
Ensembl hg19 (Hinxton)ENSG00000198668 [Gene_View]  chr14:90863327-90874619 [Contig_View]  CALM1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000198668 [Gene_View]  chr14:90863327-90874619 [Contig_View]  CALM1 [Vega]
ICGC DataPortalENSG00000198668
cBioPortalCALM1
AceView (NCBI)CALM1
Genatlas (Paris)CALM1
WikiGenes801
SOURCE (Princeton)CALM1
Genomic and cartography
GoldenPath hg19 (UCSC)CALM1  -     chr14:90863327-90874619 +  14q32.11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CALM1  -     14q32.11   [Description]    (hg38-Dec_2013)
EnsemblCALM1 - 14q32.11 [CytoView hg19]  CALM1 - 14q32.11 [CytoView hg38]
Mapping of homologs : NCBICALM1 [Mapview hg19]  CALM1 [Mapview hg38]
OMIM114180   614916   
Gene and transcription
Genbank (Entrez)AI651063 AK289937 AU122722 AY189287 BC000454
RefSeq transcript (Entrez)NM_001166106 NM_006888
RefSeq genomic (Entrez)AC_000146 NC_000014 NC_018925 NG_013338 NT_026437 NW_001838113 NW_004929393
Consensus coding sequences : CCDS (NCBI)CALM1
Cluster EST : UnigeneHs.282410 [ NCBI ]
CGAP (NCI)Hs.282410
Alternative Splicing : Fast-db (Paris)GSHG0017610
Alternative Splicing GalleryENSG00000198668
Gene ExpressionCALM1 [ NCBI-GEO ]     CALM1 [ SEEK ]   CALM1 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP62158 (Uniprot)
NextProtP62158  [Medical]
With graphics : InterProP62158
Splice isoforms : SwissVarP62158 (Swissvar)
Domaine pattern : Prosite (Expaxy)EF_HAND_1 (PS00018)    EF_HAND_2 (PS50222)   
Domains : Interpro (EBI)EF-hand-dom_pair    EF_Hand_1_Ca_BS    EF_hand_dom   
Related proteins : CluSTrP62158
Domain families : Pfam (Sanger)EF-hand_7 (PF13499)   
Domain families : Pfam (NCBI)pfam13499   
Domain families : Smart (EMBL)EFh (SM00054)  
DMDM Disease mutations801
Blocks (Seattle)P62158
PDB (SRS)1AJI    1CDL    1CLL    1CTR    1IWQ    1J7O    1J7P    1K90    1K93    1L7Z    1LVC    1NKF    1PK0    1S26    1SK6    1SW8    1WRZ    1XFU    1XFV    1XFW    1XFX    1XFY    1XFZ    1Y6W    1YR5    1YRT    1YRU    1ZOT    1ZUZ    2BE6    2F3Y    2F3Z    2HF5    2I08    2JZI    2K0E    2K0F    2K0J    2K61    2KNE    2KUG    2KUH    2L53    2L7L    2LGF    2LL6    2LL7    2LQC    2LQP    2LV6    2M0J    2M0K    2M55    2MG5    2R28    2V01    2V02    2VAY    2W73    2WEL    2X0G    2Y4V    3BYA    3DVE    3DVJ    3DVK    3DVM    3EWT    3EWV    3G43    3HR4    3J41    3O77    3O78    3OXQ    3SUI    3UCT    3UCW    3UCY    4BW7    4BW8    4BYF    4DCK    4DJC    4GOW    4JPZ    4L79   
PDB (PDBSum)1AJI    1CDL    1CLL    1CTR    1IWQ    1J7O    1J7P    1K90    1K93    1L7Z    1LVC    1NKF    1PK0    1S26    1SK6    1SW8    1WRZ    1XFU    1XFV    1XFW    1XFX    1XFY    1XFZ    1Y6W    1YR5    1YRT    1YRU    1ZOT    1ZUZ    2BE6    2F3Y    2F3Z    2HF5    2I08    2JZI    2K0E    2K0F    2K0J    2K61    2KNE    2KUG    2KUH    2L53    2L7L    2LGF    2LL6    2LL7    2LQC    2LQP    2LV6    2M0J    2M0K    2M55    2MG5    2R28    2V01    2V02    2VAY    2W73    2WEL    2X0G    2Y4V    3BYA    3DVE    3DVJ    3DVK    3DVM    3EWT    3EWV    3G43    3HR4    3J41    3O77    3O78    3OXQ    3SUI    3UCT    3UCW    3UCY    4BW7    4BW8    4BYF    4DCK    4DJC    4GOW    4JPZ    4L79   
PDB (IMB)1AJI    1CDL    1CLL    1CTR    1IWQ    1J7O    1J7P    1K90    1K93    1L7Z    1LVC    1NKF    1PK0    1S26    1SK6    1SW8    1WRZ    1XFU    1XFV    1XFW    1XFX    1XFY    1XFZ    1Y6W    1YR5    1YRT    1YRU    1ZOT    1ZUZ    2BE6    2F3Y    2F3Z    2HF5    2I08    2JZI    2K0E    2K0F    2K0J    2K61    2KNE    2KUG    2KUH    2L53    2L7L    2LGF    2LL6    2LL7    2LQC    2LQP    2LV6    2M0J    2M0K    2M55    2MG5    2R28    2V01    2V02    2VAY    2W73    2WEL    2X0G    2Y4V    3BYA    3DVE    3DVJ    3DVK    3DVM    3EWT    3EWV    3G43    3HR4    3J41    3O77    3O78    3OXQ    3SUI    3UCT    3UCW    3UCY    4BW7    4BW8    4BYF    4DCK    4DJC    4GOW    4JPZ    4L79   
PDB (RSDB)1AJI    1CDL    1CLL    1CTR    1IWQ    1J7O    1J7P    1K90    1K93    1L7Z    1LVC    1NKF    1PK0    1S26    1SK6    1SW8    1WRZ    1XFU    1XFV    1XFW    1XFX    1XFY    1XFZ    1Y6W    1YR5    1YRT    1YRU    1ZOT    1ZUZ    2BE6    2F3Y    2F3Z    2HF5    2I08    2JZI    2K0E    2K0F    2K0J    2K61    2KNE    2KUG    2KUH    2L53    2L7L    2LGF    2LL6    2LL7    2LQC    2LQP    2LV6    2M0J    2M0K    2M55    2MG5    2R28    2V01    2V02    2VAY    2W73    2WEL    2X0G    2Y4V    3BYA    3DVE    3DVJ    3DVK    3DVM    3EWT    3EWV    3G43    3HR4    3J41    3O77    3O78    3OXQ    3SUI    3UCT    3UCW    3UCY    4BW7    4BW8    4BYF    4DCK    4DJC    4GOW    4JPZ    4L79   
Human Protein AtlasENSG00000198668
Peptide AtlasP62158
HPRD00241
Protein Interaction databases
DIP (DOE-UCLA)P62158
IntAct (EBI)P62158
FunCoupENSG00000198668
BioGRIDCALM1
IntegromeDBCALM1
STRING (EMBL)CALM1
Ontologies - Pathways
QuickGOP62158
Ontology : AmiGO
Ontology : EGO-EBI
Pathways : BIOCARTAAngiotensin II mediated activation of JNK Pathway via Pyk2 dependent signaling [Genes]    fMLP induced chemokine gene expression in HMC-1 cells [Genes]    Signaling Pathway from G-Protein Families [Genes]    NFAT and Hypertrophy of the heart (Transcription in the broken heart) [Genes]    Links between Pyk2 and Map Kinases [Genes]    Pertussis toxin-insensitive CCR5 Signaling in Macrophage [Genes]    Corticosteroids and cardioprotection [Genes]    Actions of Nitric Oxide in the Heart [Genes]    Role of MEF2D in T-cell Apoptosis [Genes]    Bioactive Peptide Induced Signaling Pathway [Genes]    Nitric Oxide Signaling Pathway [Genes]    Regulation of PGC-1a [Genes]    Neuropeptides VIP and PACAP inhibit the apoptosis of activated T cells [Genes]    T Cell Receptor Signaling Pathway [Genes]    BCR Signaling Pathway [Genes]    Effects of calcineurin in Keratinocyte Differentiation [Genes]    Endocytotic role of NDK, Phosphins and Dynamin [Genes]    Ca++/ Calmodulin-dependent Protein Kinase Activation [Genes]    Fc Epsilon Receptor I Signaling in Mast Cells [Genes]    Control of skeletal myogenesis by HDAC & calcium/calmodulin-dependent kinase (CaMK) [Genes]   
Pathways : KEGGRas signaling pathway    Rap1 signaling pathway    Calcium signaling pathway    Phosphatidylinositol signaling system    Oocyte meiosis    Adrenergic signaling in cardiomyocytes    Vascular smooth muscle contraction    Circadian entrainment    Long-term potentiation    Neurotrophin signaling pathway    Dopaminergic synapse    Olfactory transduction    Phototransduction    Insulin signaling pathway    GnRH signaling pathway    Estrogen signaling pathway    Melanogenesis    Salivary secretion    Gastric acid secretion    Alzheimer's disease    Amphetamine addiction    Alcoholism    Pertussis    Tuberculosis    Glioma   
Protein Interaction DatabaseCALM1
DoCM (Curated mutations)CALM1
Wikipedia pathwaysCALM1
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerCALM1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CALM1
dbVarCALM1
ClinVarCALM1
1000_GenomesCALM1 
Exome Variant ServerCALM1
SNP (GeneSNP Utah)CALM1
SNP : HGBaseCALM1
Genetic variants : HAPMAPCALM1
Genomic VariantsCALM1  CALM1 [DGVbeta]
Mutations
ICGC Data PortalENSG00000198668 
Somatic Mutations in Cancer : COSMICCALM1 
CONAN: Copy Number AnalysisCALM1 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)14:90863327-90874619
Mutations and Diseases : HGMDCALM1
OMIM114180    614916   
MedgenCALM1
NextProtP62158 [Medical]
GENETestsCALM1
Disease Genetic AssociationCALM1
Huge Navigator CALM1 [HugePedia]  CALM1 [HugeCancerGEM]
snp3D : Map Gene to Disease801
DGIdb (Drug Gene Interaction db)CALM1
General knowledge
Homologs : HomoloGeneCALM1
Homology/Alignments : Family Browser (UCSC)CALM1
Phylogenetic Trees/Animal Genes : TreeFamCALM1
Chemical/Protein Interactions : CTD801
Chemical/Pharm GKB GenePA26035
Clinical trialCALM1
Cancer Resource (Charite)ENSG00000198668
Other databases
Probes
Litterature
PubMed318 Pubmed reference(s) in Entrez
CoreMineCALM1
GoPubMedCALM1
iHOPCALM1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Dec 20 20:36:02 CET 2014
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