CALM1 (calmodulin 1 (phosphorylase kinase, delta))

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Taking over the Atlas
Dear Colleagues,
The Atlas, once more, is in great danger, and I will have to proceed to a collective economic lay-off of all the team involved in the Atlas before the begining of April 2015 (a foundation having suddenly withdrawn its commitment to support the Atlas). I ask you herein if any Scientific Society (a Society of Cytogenetics, of Clinical Genetics, of Hematology, or a Cancer Society, or any other...), any University and/or Hospital, any Charity, or any database would be interested in taking over the Atlas, in whole or in part. If taking charge of the whole lot is too big, a consortium of various actors could be the solution (I am myself trying to find partners). Could you please spread the information, contact the relevant authorities, and find partners.
Survival of the Atlas will be critically dependant upon your ability to find solutions (and urgently!).
Kind regards.
Jean-Loup Huret
Donations are also welcome

CALM1 (calmodulin 1 (phosphorylase kinase, delta))

Identity

Other names	CALML2
	CAMI
	CPVT4
	DD132
	PHKD
	caM
HGNC (Hugo)	CALM1
LocusID (NCBI)	801
Location	14q32.11
Location_base_pair	Starts at 90863327 and ends at 90874619 bp from pter ( according to hg19-Feb_2009)
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to How to contribute

DNA/RNA

External links

	Nomenclature
HGNC (Hugo)	CALM1 1442
	Cards
Entrez_Gene (NCBI)	CALM1 801 calmodulin 1 (phosphorylase kinase, delta)
GeneCards (Weizmann)	CALM1
Ensembl hg19 (Hinxton)	ENSG00000198668 [Gene_View] chr14:90863327-90874619 [Contig_View] CALM1 [Vega]
Ensembl hg38 (Hinxton)	ENSG00000198668 [Gene_View] chr14:90863327-90874619 [Contig_View] CALM1 [Vega]
ICGC DataPortal	ENSG00000198668
cBioPortal	CALM1
AceView (NCBI)	CALM1
Genatlas (Paris)	CALM1
WikiGenes	801
SOURCE (Princeton)	CALM1
	Genomic and cartography
GoldenPath hg19 (UCSC)	CALM1 - chr14:90863327-90874619 + 14q32.11 [Description] (hg19-Feb_2009)
GoldenPath hg38 (UCSC)	CALM1 - 14q32.11 [Description] (hg38-Dec_2013)
Ensembl	CALM1 - 14q32.11 [CytoView hg19] CALM1 - 14q32.11 [CytoView hg38]
Mapping of homologs : NCBI	CALM1 [Mapview hg19] CALM1 [Mapview hg38]
OMIM	114180 614916
	Gene and transcription
Genbank (Entrez)	AI651063 AK289937 AU122722 AY189287 BC000454
RefSeq transcript (Entrez)	NM_001166106 NM_006888
RefSeq genomic (Entrez)	AC_000146 NC_000014 NC_018925 NG_013338 NT_026437 NW_001838113 NW_004929393
Consensus coding sequences : CCDS (NCBI)	CALM1
Cluster EST : Unigene	Hs.282410 [ NCBI ]
CGAP (NCI)	Hs.282410
Alternative Splicing : Fast-db (Paris)	GSHG0017610
Alternative Splicing Gallery	ENSG00000198668
Gene Expression	CALM1 [ NCBI-GEO ] CALM1 [ SEEK ] CALM1 [ MEM ]
SOURCE (Princeton)	Expression in : [Normal Tissue Atlas] [carcinoma Classsification] [NCI60]
	Protein : pattern, domain, 3D structure
UniProt/SwissProt	P62158 (Uniprot)
NextProt	P62158 [Medical]
With graphics : InterPro	P62158
Splice isoforms : SwissVar	P62158 (Swissvar)
Domaine pattern : Prosite (Expaxy)	EF_HAND_1 (PS00018) EF_HAND_2 (PS50222)
Domains : Interpro (EBI)	EF-hand-dom_pair EF_Hand_1_Ca_BS EF_hand_dom
Related proteins : CluSTr	P62158
Domain families : Pfam (Sanger)	EF-hand_7 (PF13499)
Domain families : Pfam (NCBI)	pfam13499
Domain families : Smart (EMBL)	EFh (SM00054)
DMDM Disease mutations	801
Blocks (Seattle)	P62158
PDB (SRS)	1AJI 1CDL 1CLL 1CTR 1IWQ 1J7O 1J7P 1K90 1K93 1L7Z 1LVC 1NKF 1PK0 1S26 1SK6 1SW8 1WRZ 1XFU 1XFV 1XFW 1XFX 1XFY 1XFZ 1Y6W 1YR5 1YRT 1YRU 1ZOT 1ZUZ 2BE6 2F3Y 2F3Z 2HF5 2I08 2JZI 2K0E 2K0F 2K0J 2K61 2KNE 2KUG 2KUH 2L53 2L7L 2LGF 2LL6 2LL7 2LQC 2LQP 2LV6 2M0J 2M0K 2M55 2MG5 2R28 2V01 2V02 2VAY 2W73 2WEL 2X0G 2Y4V 3BYA 3DVE 3DVJ 3DVK 3DVM 3EWT 3EWV 3G43 3HR4 3J41 3O77 3O78 3OXQ 3SUI 3UCT 3UCW 3UCY 4BW7 4BW8 4BYF 4DCK 4DJC 4GOW 4JPZ 4L79
PDB (PDBSum)	1AJI 1CDL 1CLL 1CTR 1IWQ 1J7O 1J7P 1K90 1K93 1L7Z 1LVC 1NKF 1PK0 1S26 1SK6 1SW8 1WRZ 1XFU 1XFV 1XFW 1XFX 1XFY 1XFZ 1Y6W 1YR5 1YRT 1YRU 1ZOT 1ZUZ 2BE6 2F3Y 2F3Z 2HF5 2I08 2JZI 2K0E 2K0F 2K0J 2K61 2KNE 2KUG 2KUH 2L53 2L7L 2LGF 2LL6 2LL7 2LQC 2LQP 2LV6 2M0J 2M0K 2M55 2MG5 2R28 2V01 2V02 2VAY 2W73 2WEL 2X0G 2Y4V 3BYA 3DVE 3DVJ 3DVK 3DVM 3EWT 3EWV 3G43 3HR4 3J41 3O77 3O78 3OXQ 3SUI 3UCT 3UCW 3UCY 4BW7 4BW8 4BYF 4DCK 4DJC 4GOW 4JPZ 4L79
PDB (IMB)	1AJI 1CDL 1CLL 1CTR 1IWQ 1J7O 1J7P 1K90 1K93 1L7Z 1LVC 1NKF 1PK0 1S26 1SK6 1SW8 1WRZ 1XFU 1XFV 1XFW 1XFX 1XFY 1XFZ 1Y6W 1YR5 1YRT 1YRU 1ZOT 1ZUZ 2BE6 2F3Y 2F3Z 2HF5 2I08 2JZI 2K0E 2K0F 2K0J 2K61 2KNE 2KUG 2KUH 2L53 2L7L 2LGF 2LL6 2LL7 2LQC 2LQP 2LV6 2M0J 2M0K 2M55 2MG5 2R28 2V01 2V02 2VAY 2W73 2WEL 2X0G 2Y4V 3BYA 3DVE 3DVJ 3DVK 3DVM 3EWT 3EWV 3G43 3HR4 3J41 3O77 3O78 3OXQ 3SUI 3UCT 3UCW 3UCY 4BW7 4BW8 4BYF 4DCK 4DJC 4GOW 4JPZ 4L79
PDB (RSDB)	1AJI 1CDL 1CLL 1CTR 1IWQ 1J7O 1J7P 1K90 1K93 1L7Z 1LVC 1NKF 1PK0 1S26 1SK6 1SW8 1WRZ 1XFU 1XFV 1XFW 1XFX 1XFY 1XFZ 1Y6W 1YR5 1YRT 1YRU 1ZOT 1ZUZ 2BE6 2F3Y 2F3Z 2HF5 2I08 2JZI 2K0E 2K0F 2K0J 2K61 2KNE 2KUG 2KUH 2L53 2L7L 2LGF 2LL6 2LL7 2LQC 2LQP 2LV6 2M0J 2M0K 2M55 2MG5 2R28 2V01 2V02 2VAY 2W73 2WEL 2X0G 2Y4V 3BYA 3DVE 3DVJ 3DVK 3DVM 3EWT 3EWV 3G43 3HR4 3J41 3O77 3O78 3OXQ 3SUI 3UCT 3UCW 3UCY 4BW7 4BW8 4BYF 4DCK 4DJC 4GOW 4JPZ 4L79
Human Protein Atlas	ENSG00000198668
Peptide Atlas	P62158
HPRD	00241
	Protein Interaction databases
DIP (DOE-UCLA)	P62158
IntAct (EBI)	P62158
FunCoup	ENSG00000198668
BioGRID	CALM1
IntegromeDB	CALM1
STRING (EMBL)	CALM1
	Ontologies - Pathways
QuickGO	P62158
Ontology : AmiGO
Ontology : EGO-EBI
Pathways : BIOCARTA	Angiotensin II mediated activation of JNK Pathway via Pyk2 dependent signaling [Genes] fMLP induced chemokine gene expression in HMC-1 cells [Genes] Signaling Pathway from G-Protein Families [Genes] NFAT and Hypertrophy of the heart (Transcription in the broken heart) [Genes] Links between Pyk2 and Map Kinases [Genes] Pertussis toxin-insensitive CCR5 Signaling in Macrophage [Genes] Corticosteroids and cardioprotection [Genes] Actions of Nitric Oxide in the Heart [Genes] Role of MEF2D in T-cell Apoptosis [Genes] Bioactive Peptide Induced Signaling Pathway [Genes] Nitric Oxide Signaling Pathway [Genes] Regulation of PGC-1a [Genes] Neuropeptides VIP and PACAP inhibit the apoptosis of activated T cells [Genes] T Cell Receptor Signaling Pathway [Genes] BCR Signaling Pathway [Genes] Effects of calcineurin in Keratinocyte Differentiation [Genes] Endocytotic role of NDK, Phosphins and Dynamin [Genes] Ca++/ Calmodulin-dependent Protein Kinase Activation [Genes] Fc Epsilon Receptor I Signaling in Mast Cells [Genes] Control of skeletal myogenesis by HDAC & calcium/calmodulin-dependent kinase (CaMK) [Genes]
Pathways : KEGG	Ras signaling pathway Rap1 signaling pathway Calcium signaling pathway Phosphatidylinositol signaling system Oocyte meiosis Adrenergic signaling in cardiomyocytes Vascular smooth muscle contraction Circadian entrainment Long-term potentiation Neurotrophin signaling pathway Dopaminergic synapse Olfactory transduction Phototransduction Insulin signaling pathway GnRH signaling pathway Estrogen signaling pathway Melanogenesis Salivary secretion Gastric acid secretion Alzheimer's disease Amphetamine addiction Alcoholism Pertussis Tuberculosis Glioma
Protein Interaction Database	CALM1
DoCM (Curated mutations)	CALM1
Wikipedia pathways	CALM1
	Gene fusion - rearrangements
	Polymorphisms : SNP, variants
NCBI Variation Viewer	CALM1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)	CALM1
dbVar	CALM1
ClinVar	CALM1
1000_Genomes	CALM1
Exome Variant Server	CALM1
SNP (GeneSNP Utah)	CALM1
SNP : HGBase	CALM1
Genetic variants : HAPMAP	CALM1
Genomic Variants (DGV)	CALM1 [DGVbeta]
	Mutations
ICGC Data Portal	ENSG00000198668
Somatic Mutations in Cancer : COSMIC	CALM1
CONAN: Copy Number Analysis	CALM1
LOVD (Leiden Open Variation Database)	Whole genome datasets
LOVD (Leiden Open Variation Database)	LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)	LOVD 3.0 shared installation
Impact of mutations	[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor]
	Diseases
DECIPHER (Syndromes)	14:90863327-90874619
Mutations and Diseases : HGMD	CALM1
OMIM	114180 614916
Medgen	CALM1
NextProt	P62158 [Medical]
GENETests	CALM1
Disease Genetic Association	CALM1
Huge Navigator	CALM1 [HugePedia] CALM1 [HugeCancerGEM]
snp3D : Map Gene to Disease	801
DGIdb (Drug Gene Interaction db)	CALM1
	General knowledge
Homologs : HomoloGene	CALM1
Homology/Alignments : Family Browser (UCSC)	CALM1
Phylogenetic Trees/Animal Genes : TreeFam	CALM1
Chemical/Protein Interactions : CTD	801
Chemical/Pharm GKB Gene	PA26035
Clinical trial	CALM1
Cancer Resource (Charite)	ENSG00000198668
	Other databases
	Probes
	Litterature
PubMed	318 Pubmed reference(s) in Entrez
CoreMine	CALM1
GoPubMed	CALM1
iHOP	CALM1

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S

Updated	12-2014	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Sat Feb 14 15:00:24 CET 2015

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For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.