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CALM3 (calmodulin 3)

Identity

Alias_namescalmodulin 3 (phosphorylase kinase
Alias_symbol (synonym)PHKD
Other aliasCALM
CAM1
CAM2
CAMB
CaM
CaMIII
HEL-S-72
PHKD3
HGNC (Hugo) CALM3
LocusID (NCBI) 808
Atlas_Id 53209
Location 19q13.32  [Link to chromosome band 19q13]
Location_base_pair Starts at 46601150 and ends at 46610782 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CADM3 (1q23.2) / CALM3 (19q13.32)CALM3 (19q13.32) / ANKRD26 (10p12.1)CALM3 (19q13.32) / CALM3 (19q13.32)
CALM3 (19q13.32) / DDX5 (17q23.3)CALM3 (19q13.32) / MSN (Xq12)CALM3 (19q13.32) / SCN3A (2q24.3)
CALM3 (19q13.32) / TROVE2 (1q31.2)CELSR2 (1p13.3) / CALM3 (19q13.32)COL18A1 (21q22.3) / CALM3 (19q13.32)
NCAM1 (11q23.2) / CALM3 (19q13.32)PLPP3 (1p32.2) / CALM3 (19q13.32)SPINT1 (15q15.1) / CALM3 (19q13.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CALM3   1449
LRG (Locus Reference Genomic)LRG_1082
Cards
Entrez_Gene (NCBI)CALM3  808  calmodulin 3
AliasesCALM; CAM1; CAM2; CAMB; 
CaM; CaMIII; HEL-S-72; PHKD; PHKD3
GeneCards (Weizmann)CALM3
Ensembl hg19 (Hinxton)ENSG00000160014 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000160014 [Gene_View]  ENSG00000160014 [Sequence]  chr19:46601150-46610782 [Contig_View]  CALM3 [Vega]
ICGC DataPortalENSG00000160014
TCGA cBioPortalCALM3
AceView (NCBI)CALM3
Genatlas (Paris)CALM3
WikiGenes808
SOURCE (Princeton)CALM3
Genetics Home Reference (NIH)CALM3
Genomic and cartography
GoldenPath hg38 (UCSC)CALM3  -     chr19:46601150-46610782 +  19q13.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CALM3  -     19q13.32   [Description]    (hg19-Feb_2009)
GoldenPathCALM3 - 19q13.32 [CytoView hg19]  CALM3 - 19q13.32 [CytoView hg38]
ImmunoBaseENSG00000160014
Mapping of homologs : NCBICALM3 [Mapview hg19]  CALM3 [Mapview hg38]
OMIM114183   
Gene and transcription
Genbank (Entrez)AK094964 AK295927 AK310762 AL050207 AW883334
RefSeq transcript (Entrez)NM_001329921 NM_001329922 NM_001329923 NM_001329924 NM_001329925 NM_001329926 NM_005184
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CALM3
Cluster EST : UnigeneHs.515487 [ NCBI ]
CGAP (NCI)Hs.515487
Alternative Splicing GalleryENSG00000160014
Gene ExpressionCALM3 [ NCBI-GEO ]   CALM3 [ EBI - ARRAY_EXPRESS ]   CALM3 [ SEEK ]   CALM3 [ MEM ]
Gene Expression Viewer (FireBrowse)CALM3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)808
GTEX Portal (Tissue expression)CALM3
Human Protein AtlasENSG00000160014-CALM3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CALM3
DMDM Disease mutations808
Blocks (Seattle)CALM3
Human Protein Atlas [tissue]ENSG00000160014-CALM3 [tissue]
HPRD00243
Protein Interaction databases
FunCoupENSG00000160014
BioGRIDCALM3
STRING (EMBL)CALM3
ZODIACCALM3
Ontologies - Pathways
Huge Navigator CALM3 [HugePedia]
snp3D : Map Gene to Disease808
BioCentury BCIQCALM3
ClinGenCALM3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD808
Chemical/Pharm GKB GenePA26042
Clinical trialCALM3
Miscellaneous
canSAR (ICR)CALM3 (select the gene name)
DataMed IndexCALM3
Probes
Litterature
PubMed200 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCALM3
EVEXCALM3
GoPubMedCALM3
iHOPCALM3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Aug 12 15:27:05 CEST 2019

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