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CALML3 (calmodulin like 3)

Identity

Alias_namescalmodulin-like 3
Alias_symbol (synonym)CLP
Other alias
HGNC (Hugo) CALML3
LocusID (NCBI) 810
Atlas_Id 56567
Location 10p15.1  [Link to chromosome band 10p15]
Location_base_pair Starts at 5524889 and ends at 5526268 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CALML3 (10p15.1) / GAS8 (16q24.3)GAS8 (16q24.3) / CALML3 (10p15.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CALML3   1452
Cards
Entrez_Gene (NCBI)CALML3  810  calmodulin like 3
AliasesCLP
GeneCards (Weizmann)CALML3
Ensembl hg19 (Hinxton)ENSG00000178363 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000178363 [Gene_View]  chr10:5524889-5526268 [Contig_View]  CALML3 [Vega]
ICGC DataPortalENSG00000178363
TCGA cBioPortalCALML3
AceView (NCBI)CALML3
Genatlas (Paris)CALML3
WikiGenes810
SOURCE (Princeton)CALML3
Genetics Home Reference (NIH)CALML3
Genomic and cartography
GoldenPath hg38 (UCSC)CALML3  -     chr10:5524889-5526268 +  10p15.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CALML3  -     10p15.1   [Description]    (hg19-Feb_2009)
EnsemblCALML3 - 10p15.1 [CytoView hg19]  CALML3 - 10p15.1 [CytoView hg38]
Mapping of homologs : NCBICALML3 [Mapview hg19]  CALML3 [Mapview hg38]
OMIM114184   
Gene and transcription
Genbank (Entrez)AK313934 BC031889 CU454493 DQ891776 DQ894960
RefSeq transcript (Entrez)NM_005185
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CALML3
Cluster EST : UnigeneHs.239600 [ NCBI ]
CGAP (NCI)Hs.239600
Alternative Splicing GalleryENSG00000178363
Gene ExpressionCALML3 [ NCBI-GEO ]   CALML3 [ EBI - ARRAY_EXPRESS ]   CALML3 [ SEEK ]   CALML3 [ MEM ]
Gene Expression Viewer (FireBrowse)CALML3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)810
GTEX Portal (Tissue expression)CALML3
Protein : pattern, domain, 3D structure
UniProt/SwissProtP27482   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP27482  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP27482
Splice isoforms : SwissVarP27482
PhosPhoSitePlusP27482
Domaine pattern : Prosite (Expaxy)EF_HAND_1 (PS00018)    EF_HAND_2 (PS50222)   
Domains : Interpro (EBI)EF-hand-dom_pair    EF_Hand_1_Ca_BS    EF_hand_dom   
Domain families : Pfam (Sanger)EF-hand_7 (PF13499)   
Domain families : Pfam (NCBI)pfam13499   
Domain families : Smart (EMBL)EFh (SM00054)  
Conserved Domain (NCBI)CALML3
DMDM Disease mutations810
Blocks (Seattle)CALML3
PDB (SRS)1GGZ   
PDB (PDBSum)1GGZ   
PDB (IMB)1GGZ   
PDB (RSDB)1GGZ   
Structural Biology KnowledgeBase1GGZ   
SCOP (Structural Classification of Proteins)1GGZ   
CATH (Classification of proteins structures)1GGZ   
SuperfamilyP27482
Human Protein AtlasENSG00000178363
Peptide AtlasP27482
HPRD00244
IPIIPI00216984   
Protein Interaction databases
DIP (DOE-UCLA)P27482
IntAct (EBI)P27482
FunCoupENSG00000178363
BioGRIDCALML3
STRING (EMBL)CALML3
ZODIACCALML3
Ontologies - Pathways
QuickGOP27482
Ontology : AmiGOcalcium ion binding  protein binding  extracellular exosome  
Ontology : EGO-EBIcalcium ion binding  protein binding  extracellular exosome  
Pathways : KEGG   
NDEx NetworkCALML3
Atlas of Cancer Signalling NetworkCALML3
Wikipedia pathwaysCALML3
Orthology - Evolution
OrthoDB810
GeneTree (enSembl)ENSG00000178363
Phylogenetic Trees/Animal Genes : TreeFamCALML3
HOVERGENP27482
HOGENOMP27482
Homologs : HomoloGeneCALML3
Homology/Alignments : Family Browser (UCSC)CALML3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCALML3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CALML3
dbVarCALML3
ClinVarCALML3
1000_GenomesCALML3 
Exome Variant ServerCALML3
ExAC (Exome Aggregation Consortium)CALML3 (select the gene name)
Genetic variants : HAPMAP810
Genomic Variants (DGV)CALML3 [DGVbeta]
DECIPHERCALML3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCALML3 
Mutations
ICGC Data PortalCALML3 
TCGA Data PortalCALML3 
Broad Tumor PortalCALML3
OASIS PortalCALML3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCALML3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCALML3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CALML3
DgiDB (Drug Gene Interaction Database)CALML3
DoCM (Curated mutations)CALML3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CALML3 (select a term)
intoGenCALML3
Cancer3DCALML3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM114184   
Orphanet
MedgenCALML3
Genetic Testing Registry CALML3
NextProtP27482 [Medical]
TSGene810
GENETestsCALML3
Target ValidationCALML3
Huge Navigator CALML3 [HugePedia]
snp3D : Map Gene to Disease810
BioCentury BCIQCALML3
ClinGenCALML3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD810
Chemical/Pharm GKB GenePA26044
Clinical trialCALML3
Miscellaneous
canSAR (ICR)CALML3 (select the gene name)
Probes
Litterature
PubMed33 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCALML3
EVEXCALML3
GoPubMedCALML3
iHOPCALML3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:00:18 CEST 2017

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