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CALML4 (calmodulin like 4)

Identity

Other namesNY-BR-20
HGNC (Hugo) CALML4
LocusID (NCBI) 91860
Atlas_Id 41355
Location 15q23
Location_base_pair Starts at 68483043 and ends at 68498448 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CALML4 (15q23) / GAPDH (12p13.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CALML4   18445
Cards
Entrez_Gene (NCBI)CALML4  91860  calmodulin like 4
GeneCards (Weizmann)CALML4
Ensembl hg19 (Hinxton)ENSG00000129007 [Gene_View]  chr15:68483043-68498448 [Contig_View]  CALML4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000129007 [Gene_View]  chr15:68483043-68498448 [Contig_View]  CALML4 [Vega]
ICGC DataPortalENSG00000129007
TCGA cBioPortalCALML4
AceView (NCBI)CALML4
Genatlas (Paris)CALML4
WikiGenes91860
SOURCE (Princeton)CALML4
Genomic and cartography
GoldenPath hg19 (UCSC)CALML4  -     chr15:68483043-68498448 -  15q23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CALML4  -     15q23   [Description]    (hg38-Dec_2013)
EnsemblCALML4 - 15q23 [CytoView hg19]  CALML4 - 15q23 [CytoView hg38]
Mapping of homologs : NCBICALML4 [Mapview hg19]  CALML4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF308287 AK092628 AK296804 BC009516 BC015215
RefSeq transcript (Entrez)NM_001031733 NM_001286694 NM_001286695 NM_033429
RefSeq genomic (Entrez)NC_000015 NC_018926 NT_010194 NW_004929398
Consensus coding sequences : CCDS (NCBI)CALML4
Cluster EST : UnigeneHs.709550 [ NCBI ]
CGAP (NCI)Hs.709550
Alternative Splicing : Fast-db (Paris)GSHG0010540
Alternative Splicing GalleryENSG00000129007
Gene ExpressionCALML4 [ NCBI-GEO ]   CALML4 [ EBI - ARRAY_EXPRESS ]   CALML4 [ SEEK ]   CALML4 [ MEM ]
Gene Expression Viewer (FireBrowse)CALML4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)91860
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96GE6 (Uniprot)
NextProtQ96GE6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96GE6
Splice isoforms : SwissVarQ96GE6 (Swissvar)
PhosPhoSitePlusQ96GE6
Domaine pattern : Prosite (Expaxy)EF_HAND_2 (PS50222)   
Domains : Interpro (EBI)EF-hand-dom_pair    EF_hand_dom   
Domain families : Pfam (Sanger)EF-hand_7 (PF13499)    EF-hand_8 (PF13833)   
Domain families : Pfam (NCBI)pfam13499    pfam13833   
Domain families : Smart (EMBL)EFh (SM00054)  
DMDM Disease mutations91860
Blocks (Seattle)CALML4
SuperfamilyQ96GE6
Human Protein AtlasENSG00000129007
Peptide AtlasQ96GE6
HPRD12998
IPIIPI00478437   IPI00791138   IPI00789951   IPI00852704   IPI00853344   
Protein Interaction databases
DIP (DOE-UCLA)Q96GE6
IntAct (EBI)Q96GE6
FunCoupENSG00000129007
BioGRIDCALML4
STRING (EMBL)CALML4
ZODIACCALML4
Ontologies - Pathways
QuickGOQ96GE6
Ontology : AmiGOcalcium ion binding  
Ontology : EGO-EBIcalcium ion binding  
NDEx Network
Atlas of Cancer Signalling NetworkCALML4
Wikipedia pathwaysCALML4
Orthology - Evolution
OrthoDB91860
GeneTree (enSembl)ENSG00000129007
Phylogenetic Trees/Animal Genes : TreeFamCALML4
Homologs : HomoloGeneCALML4
Homology/Alignments : Family Browser (UCSC)CALML4
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerCALML4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CALML4
dbVarCALML4
ClinVarCALML4
1000_GenomesCALML4 
Exome Variant ServerCALML4
ExAC (Exome Aggregation Consortium)CALML4 (select the gene name)
SNP (GeneSNP Utah)CALML4
SNP : HGBaseCALML4
Genetic variants : HAPMAPCALML4
Genomic Variants (DGV)CALML4 [DGVbeta]
Mutations
ICGC Data PortalCALML4 
TCGA Data PortalCALML4 
Broad Tumor PortalCALML4
OASIS PortalCALML4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCALML4 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CALML4
DgiDB (Drug Gene Interaction Database)CALML4
DoCM (Curated mutations)CALML4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CALML4 (select a term)
intoGenCALML4
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)15:68483043-68498448
CONAN: Copy Number AnalysisCALML4 
Mutations and Diseases : HGMDCALML4
OMIM
MedgenCALML4
Genetic Testing Registry CALML4
NextProtQ96GE6 [Medical]
TSGene91860
GENETestsCALML4
Huge Navigator CALML4 [HugePedia]  CALML4 [HugeCancerGEM]
snp3D : Map Gene to Disease91860
BioCentury BCIQCALML4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD91860
Chemical/Pharm GKB GenePA134903345
Clinical trialCALML4
Miscellaneous
canSAR (ICR)CALML4 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCALML4
GoPubMedCALML4
iHOPCALML4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Sat Apr 16 17:38:24 CEST 2016

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