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Taking over the Atlas
Dear Colleagues,
The Atlas, once more, is in great danger, and I will have to proceed to a collective economic lay-off of all the team involved in the Atlas before the begining of April 2015 (a foundation having suddenly withdrawn its commitment to support the Atlas). I ask you herein if any Scientific Society (a Society of Cytogenetics, of Clinical Genetics, of Hematology, or a Cancer Society, or any other...), any University and/or Hospital, any Charity, or any database would be interested in taking over the Atlas, in whole or in part. If taking charge of the whole lot is too big, a consortium of various actors could be the solution (I am myself trying to find partners). Could you please spread the information, contact the relevant authorities, and find partners.
Survival of the Atlas will be critically dependant upon your ability to find solutions (and urgently!).
Kind regards.
Jean-Loup Huret
Donations are also welcome

Donate (in Euros)

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CALML4 (calmodulin-like 4)

Identity

Other namesNY-BR-20
HGNC (Hugo) CALML4
LocusID (NCBI) 91860
Location 15q23
Location_base_pair Starts at 68483043 and ends at 68498448 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CALML4   18445
Cards
Entrez_Gene (NCBI)CALML4  91860  calmodulin-like 4
GeneCards (Weizmann)CALML4
Ensembl hg19 (Hinxton) [Gene_View]  chr15:68483043-68498448 [Contig_View]  CALML4 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr15:68483043-68498448 [Contig_View]  CALML4 [Vega]
cBioPortalCALML4
AceView (NCBI)CALML4
Genatlas (Paris)CALML4
WikiGenes91860
SOURCE (Princeton)CALML4
Genomic and cartography
GoldenPath hg19 (UCSC)CALML4  -     chr15:68483043-68498448 -  15q23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CALML4  -     15q23   [Description]    (hg38-Dec_2013)
EnsemblCALML4 - 15q23 [CytoView hg19]  CALML4 - 15q23 [CytoView hg38]
Mapping of homologs : NCBICALML4 [Mapview hg19]  CALML4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF308287 AK092628 AK296804 BC009516 BC015215
RefSeq transcript (Entrez)NM_001031733 NM_001286694 NM_001286695 NM_033429
RefSeq genomic (Entrez)AC_000147 NC_000015 NC_018926 NT_010194 NW_001838218 NW_004929398
Consensus coding sequences : CCDS (NCBI)CALML4
Cluster EST : UnigeneHs.709550 [ NCBI ]
CGAP (NCI)Hs.709550
Alternative Splicing : Fast-db (Paris)GSHG0010540
Gene ExpressionCALML4 [ NCBI-GEO ]     CALML4 [ SEEK ]   CALML4 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96GE6 (Uniprot)
NextProtQ96GE6  [Medical]
With graphics : InterProQ96GE6
Splice isoforms : SwissVarQ96GE6 (Swissvar)
Domaine pattern : Prosite (Expaxy)EF_HAND_2 (PS50222)   
Domains : Interpro (EBI)EF-hand-dom_pair    EF_hand_dom   
Related proteins : CluSTrQ96GE6
Domain families : Pfam (Sanger)EF-hand_7 (PF13499)   
Domain families : Pfam (NCBI)pfam13499   
Domain families : Smart (EMBL)EFh (SM00054)  
DMDM Disease mutations91860
Blocks (Seattle)Q96GE6
Peptide AtlasQ96GE6
HPRD12998
IPIIPI00478437   IPI00791138   IPI00789951   IPI00852704   IPI00853344   
Protein Interaction databases
DIP (DOE-UCLA)Q96GE6
IntAct (EBI)Q96GE6
BioGRIDCALML4
IntegromeDBCALML4
STRING (EMBL)CALML4
Ontologies - Pathways
QuickGOQ96GE6
Ontology : AmiGOcalcium ion binding  
Ontology : EGO-EBIcalcium ion binding  
Protein Interaction DatabaseCALML4
DoCM (Curated mutations)CALML4
Wikipedia pathwaysCALML4
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerCALML4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CALML4
dbVarCALML4
ClinVarCALML4
1000_GenomesCALML4 
Exome Variant ServerCALML4
SNP (GeneSNP Utah)CALML4
SNP : HGBaseCALML4
Genetic variants : HAPMAPCALML4
Genomic Variants (DGV)CALML4 [DGVbeta]
Mutations
Somatic Mutations in Cancer : COSMICCALML4 
CONAN: Copy Number AnalysisCALML4 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)15:68483043-68498448
Mutations and Diseases : HGMDCALML4
OMIM
MedgenCALML4
NextProtQ96GE6 [Medical]
GENETestsCALML4
Disease Genetic AssociationCALML4
Huge Navigator CALML4 [HugePedia]  CALML4 [HugeCancerGEM]
snp3D : Map Gene to Disease91860
DGIdb (Drug Gene Interaction db)CALML4
General knowledge
Homologs : HomoloGeneCALML4
Homology/Alignments : Family Browser (UCSC)CALML4
Phylogenetic Trees/Animal Genes : TreeFamCALML4
Chemical/Protein Interactions : CTD91860
Chemical/Pharm GKB GenePA134903345
Clinical trialCALML4
Other databases
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
CoreMineCALML4
GoPubMedCALML4
iHOPCALML4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Feb 14 15:00:28 CET 2015

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