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CALML5 (calmodulin like 5)

Identity

Alias_namescalmodulin-like 5
Alias_symbol (synonym)CLSP
Other alias
HGNC (Hugo) CALML5
LocusID (NCBI) 51806
Atlas_Id 53700
Location 10p15.1  [Link to chromosome band 10p15]
Location_base_pair Starts at 5498695 and ends at 5499570 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CALML5   18180
Cards
Entrez_Gene (NCBI)CALML5  51806  calmodulin like 5
AliasesCLSP
GeneCards (Weizmann)CALML5
Ensembl hg19 (Hinxton)ENSG00000178372 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000178372 [Gene_View]  chr10:5498695-5499570 [Contig_View]  CALML5 [Vega]
ICGC DataPortalENSG00000178372
TCGA cBioPortalCALML5
AceView (NCBI)CALML5
Genatlas (Paris)CALML5
WikiGenes51806
SOURCE (Princeton)CALML5
Genetics Home Reference (NIH)CALML5
Genomic and cartography
GoldenPath hg38 (UCSC)CALML5  -     chr10:5498695-5499570 -  10p15.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CALML5  -     10p15.1   [Description]    (hg19-Feb_2009)
EnsemblCALML5 - 10p15.1 [CytoView hg19]  CALML5 - 10p15.1 [CytoView hg38]
Mapping of homologs : NCBICALML5 [Mapview hg19]  CALML5 [Mapview hg38]
OMIM605183   
Gene and transcription
Genbank (Entrez)AF172852 AK222744 BC039172 JF432778
RefSeq transcript (Entrez)NM_017422
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CALML5
Cluster EST : UnigeneHs.180142 [ NCBI ]
CGAP (NCI)Hs.180142
Alternative Splicing GalleryENSG00000178372
Gene ExpressionCALML5 [ NCBI-GEO ]   CALML5 [ EBI - ARRAY_EXPRESS ]   CALML5 [ SEEK ]   CALML5 [ MEM ]
Gene Expression Viewer (FireBrowse)CALML5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51806
GTEX Portal (Tissue expression)CALML5
Human Protein AtlasENSG00000178372-CALML5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NZT1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NZT1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NZT1
Splice isoforms : SwissVarQ9NZT1
PhosPhoSitePlusQ9NZT1
Domaine pattern : Prosite (Expaxy)EF_HAND_1 (PS00018)    EF_HAND_2 (PS50222)   
Domains : Interpro (EBI)EF-hand-dom_pair    EF_Hand_1_Ca_BS    EF_hand_dom   
Domain families : Pfam (Sanger)EF-hand_7 (PF13499)   
Domain families : Pfam (NCBI)pfam13499   
Domain families : Smart (EMBL)EFh (SM00054)  
Conserved Domain (NCBI)CALML5
DMDM Disease mutations51806
Blocks (Seattle)CALML5
PDB (SRS)2B1U   
PDB (PDBSum)2B1U   
PDB (IMB)2B1U   
PDB (RSDB)2B1U   
Structural Biology KnowledgeBase2B1U   
SCOP (Structural Classification of Proteins)2B1U   
CATH (Classification of proteins structures)2B1U   
SuperfamilyQ9NZT1
Human Protein Atlas [tissue]ENSG00000178372-CALML5 [tissue]
Peptide AtlasQ9NZT1
HPRD05538
IPIIPI00021536   
Protein Interaction databases
DIP (DOE-UCLA)Q9NZT1
IntAct (EBI)Q9NZT1
FunCoupENSG00000178372
BioGRIDCALML5
STRING (EMBL)CALML5
ZODIACCALML5
Ontologies - Pathways
QuickGOQ9NZT1
Ontology : AmiGOcalcium ion binding  extracellular region  signal transduction  epidermis development  neutrophil degranulation  extracellular exosome  ficolin-1-rich granule lumen  
Ontology : EGO-EBIcalcium ion binding  extracellular region  signal transduction  epidermis development  neutrophil degranulation  extracellular exosome  ficolin-1-rich granule lumen  
Pathways : KEGG   
NDEx NetworkCALML5
Atlas of Cancer Signalling NetworkCALML5
Wikipedia pathwaysCALML5
Orthology - Evolution
OrthoDB51806
GeneTree (enSembl)ENSG00000178372
Phylogenetic Trees/Animal Genes : TreeFamCALML5
HOVERGENQ9NZT1
HOGENOMQ9NZT1
Homologs : HomoloGeneCALML5
Homology/Alignments : Family Browser (UCSC)CALML5
Gene fusions - Rearrangements
Tumor Fusion PortalCALML5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCALML5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CALML5
dbVarCALML5
ClinVarCALML5
1000_GenomesCALML5 
Exome Variant ServerCALML5
ExAC (Exome Aggregation Consortium)ENSG00000178372
GNOMAD BrowserENSG00000178372
Genetic variants : HAPMAP51806
Genomic Variants (DGV)CALML5 [DGVbeta]
DECIPHERCALML5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCALML5 
Mutations
ICGC Data PortalCALML5 
TCGA Data PortalCALML5 
Broad Tumor PortalCALML5
OASIS PortalCALML5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCALML5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCALML5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CALML5
DgiDB (Drug Gene Interaction Database)CALML5
DoCM (Curated mutations)CALML5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CALML5 (select a term)
intoGenCALML5
Cancer3DCALML5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605183   
Orphanet
DisGeNETCALML5
MedgenCALML5
Genetic Testing Registry CALML5
NextProtQ9NZT1 [Medical]
TSGene51806
GENETestsCALML5
Target ValidationCALML5
Huge Navigator CALML5 [HugePedia]
snp3D : Map Gene to Disease51806
BioCentury BCIQCALML5
ClinGenCALML5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51806
Chemical/Pharm GKB GenePA134862009
Clinical trialCALML5
Miscellaneous
canSAR (ICR)CALML5 (select the gene name)
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCALML5
EVEXCALML5
GoPubMedCALML5
iHOPCALML5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:05:50 CET 2017

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